Browse Element(s) Details


Os.55429.1.S1_at

Description gb:AK108079.1
DB_XREF= gi:32993288
TID=Os.55429.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E09, full insert sequence.
FL= gb:AK108079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1120011/1112-oxophytodienoate reductase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11160OsAffx.27668.1.S1_at1/116+5853314..5853670hypothetical protein
LOC_Os06g11170Os.10676.1.S1_a_at11/116+5856427..5860126U1 zinc finger family protein, expressed
LOC_Os06g11180Os.5813.1.S1_at11/116+5861189..5868597prolyl oligopeptidase family protein, expressed
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55429.1.S1_at--1066--4811Chr06:5877930..5877954 (25 bp)
GCTCTTCTTGGCGAATCCTGATCTG
LOC_Os06g11200
Os.55429.1.S1_at--1152--3851Chr06:5877913..5877937 (25 bp)
CTGATCTGCCCAAGAGGTTCGAGCT
LOC_Os06g11200
Os.55429.1.S1_at--554--4791Chr06:5877891..5877915 (25 bp)
GCTCGATGCGCCCATGAATAACTAC
LOC_Os06g11200
Os.55429.1.S1_at--170--5231Chr06:5877876..5877900 (25 bp)
GAATAACTACGATCGCAACACCTTC
LOC_Os06g11200
Os.55429.1.S1_at--295--7951Chr06:5877843..5877867 (25 bp)
GGATCCTGTGGTTGGGTACACCGAC
LOC_Os06g11200
Os.55429.1.S1_at--645--10291Chr06:5877813..5877837 (25 bp)
TTTCCTTGACGAGCATCACCATGAC
LOC_Os06g11200
Os.55429.1.S1_at--775--1851Chr06:5877787..5877811 (25 bp)
ACGACGATGACTCTAATGCTCCTTC
LOC_Os06g11200
Os.55429.1.S1_at--721--611Chr06:5877772..5877796 (25 bp)
ATGCTCCTTCTGCTTAAAACCAGTC
LOC_Os06g11200
Os.55429.1.S1_at--252--3531Chr06:5877748..5877772 (25 bp)
CATGCAACTCTTCAAATCGATCGGC
LOC_Os06g11200
Os.55429.1.S1_at--100--371Chr06:5877716..5877740 (25 bp)
ATCAATAATGCAGGCACCCGTGCTA
LOC_Os06g11200
Os.55429.1.S1_at--270--9391Chr06:5877691..5877715 (25 bp)
TCGATTTCACTATTTACCGCTACAT
LOC_Os06g11200
Target Sequence 
GCTCTTCTTGGCGAATCCTGATCTGCCCAAGAGGTTCGAGCTCGATGCGCCCATGAATAACTACGATCGCAACACCTTCT
ACACGCAGGATCCTGTGGTTGGGTACACCGACTATCCTTTCCTTGACGAGCATCACCATGACGACGACGATGACTCTAAT
GCTCCTTCTGCTTAAAACCAGTCATGCAACTCTTCAAATCGATCGGCATCAATAATCAATAATGCAGGCACCCGTGCTAT
CGATTTCACTATTTACCGCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis