Browse Element(s) Details


OsAffx.27564.1.S1_at

Description tigr:9634.m01097
TID=OsAffx.27564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 12-oxophytodienoic acid reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1125011/1112-oxophytodienoate reductase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11300Os.54009.1.S1_at11/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11300OsAffx.20919.1.S1_x_at1/116+5920696..5922665pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27564.1.S1_at--59--871Chr06:5899129..5899153 (25 bp)
ATGGCTACCTCATCGATCAGTTCAT
LOC_Os06g11250
OsAffx.27564.1.S1_at--339--7671Chr06:5898989..5899013 (25 bp)
GGGATCAGATTGTCGCCATATATAG
LOC_Os06g11250
OsAffx.27564.1.S1_at--583--10191Chr06:5898969..5898993 (25 bp)
TATAGATTTTATGGACTGCTTCGAC
LOC_Os06g11250
OsAffx.27564.1.S1_at--760--8451Chr06:5898822..5898846 (25 bp)
TGGCCTCCTGCCATTTCGGAAGCAA
LOC_Os06g11250
OsAffx.27564.1.S1_at--537--10611Chr06:5898808..5898832 (25 bp)
TTCGGAAGCAATTCAATGGCACTTT
LOC_Os06g11250
OsAffx.27564.1.S1_at--129--2971Chr06:5898794..5898818 (25 bp)
AATGGCACTTTCATTGCCTCCGGAG
LOC_Os06g11250
OsAffx.27564.1.S1_at--21--4191Chr06:5898687..5898711 (25 bp)
CCCCGACTTGCCAAGGAGGTTCGAG
LOC_Os06g11250
OsAffx.27564.1.S1_at--530--1011Chr06:5898671..5898695 (25 bp)
AGGTTCGAGCTTAATGCACCGTTAA
LOC_Os06g11250
OsAffx.27564.1.S1_at--454--171Chr06:5898627..5898651 (25 bp)
ATTTTACACACATGATCCCGTCGTT
LOC_Os06g11250
OsAffx.27564.1.S1_at--182--7191Chr06:5898608..5898632 (25 bp)
GTCGTTGGCTACACGGATTACCCTT
LOC_Os06g11250
OsAffx.27564.1.S1_at--574--7931Chr06:5898594..5898618 (25 bp)
GGATTACCCTTTCCTTGAGGAGAAG
LOC_Os06g11250
Target Sequence 
ATGGCTACCTCATCGATCAGTTCATGAAGGACAGCGCCAACGGCCGGACCGACCAGTACGGTGGCAGCCTCGAGAACCGT
TGCCGCTTCGCCGTCGAGGTGATCGACGCCGTCGTCGCCGAGGTGGGAGCTGACCGTGTTGGGATCAGATTGTCGCCATA
TATAGATTTTATGGACTGCTTCGACTCGAACCCCGAAGCTCTCGGCTCATACATGGTGCGGCAACTCAACAAGCACCCAG
AGCTCCTCTACTGCCACATGGTGGAGCCGAGGATGGCCACCGTCGAAGGACGGAGGAAGATCAACCATGGCCTCCTGCCA
TTTCGGAAGCAATTCAATGGCACTTTCATTGCCTCCGGAGGGTATGACCGGGAGGAAGGGAACAAGGTGGTGGATGATGG
CTATGCCGACCTCGTCGCCTATGGGAGGCTCTTCTTGGCCAACCCCGACTTGCCAAGGAGGTTCGAGCTTAATGCACCGT
TAAACAAGTATGATGGATCTACATTTTACACACATGATCCCGTCGTTGGCTACACGGATTACCCTTTCCTTGAGGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis