Browse Element(s) Details


OsAffx.20919.1.S1_x_at

Description gb:XM_354264.1
DB_XREF= gi:35189961
TID=OsAffx.20919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g113001/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11300Os.54009.1.S1_at11/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11300OsAffx.20919.1.S1_x_at1/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11310Os.50764.1.S1_at10/116+5929406..5930985Plastocyanin-like domain containing protein, expressed
LOC_Os06g11320Os.15219.1.S1_at11/116+5932790..5938506peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20919.1.S1_x_at--295--3931Chr07:23863747..23863771 (25 bp)
CGGCCGGCCTTGACGACGAACGATG
NONE
OsAffx.20919.1.S1_x_at--198--3631Chr07:23863755..23863779 (25 bp)
CTTGACGACGAACGATGATGGCCAC
NONE
OsAffx.20919.1.S1_x_at--593--10751Chr07:23863756..23863780 (25 bp)
TTGACGACGAACGATGATGGCCACC
NONE
OsAffx.20919.1.S1_x_at--315--5791Chr07:23863758..23863782 (25 bp)
GACGACGAACGATGATGGCCACCGC
NONE
OsAffx.20919.1.S1_x_at--188--5791Chr07:23863761..23863785 (25 bp)
GACGAACGATGATGGCCACCGCGTG
NONE
OsAffx.20919.1.S1_x_at--432--2592Chr07:23863765..23863789 (25 bp)
AACGATGATGGCCACCGCGTGCACG
NONE
OsAffx.20919.1.S1_x_at--82--4671Chr07:23863781..23864022 (25 bp)
GCGTGCACGCCGTGCTCTCGCAGTA
NONE
OsAffx.20919.1.S1_x_at--452--9091Chr07:23863793..23864034 (25 bp)
TGCTCTCGCAGTACGTACTGCGTGC
NONE
OsAffx.20919.1.S1_x_at--453--4811Chr07:23863794..23864035 (25 bp)
GCTCTCGCAGTACGTACTGCGTGCT
NONE
OsAffx.20919.1.S1_x_at--188--9351NONE
TCGCAGTACGTACTGCGTGCTGCTG
NONE
OsAffx.20919.1.S1_x_at--743--4111Chr07:23864017..23864040 (24 bp)
CGCAGTACGTACTGCGTGCTGCTGC
NONE
Target Sequence 
CGGCCGGCCTTGACGACGAACGATGATGGCCACCGCGTGCACGCCGTGCTCTCGCAGTACGTACTGCGTGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20919.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis