Browse Element(s) Details


Os.8778.1.S1_a_at

Description gb:AB040743.1
DB_XREF= gi:23495287
GEN=RRJ4
TID=Os.8778.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8778 (NCBI UniGene Cluster)
DEF=Oryza sativa RRJ4 mRNA for 12-oxophytodienoic acid reductase, complete cds.
PROD=12-oxophytodienoic acid reductase
FL= gb:AB040743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1129011/1112-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g112807/1112-oxophytodienoate reductase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11300Os.54009.1.S1_at11/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11300OsAffx.20919.1.S1_x_at1/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11310Os.50764.1.S1_at10/116+5929406..5930985Plastocyanin-like domain containing protein, expressed
LOC_Os06g11320Os.15219.1.S1_at11/116+5932790..5938506peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8778.1.S1_a_at--940--871Chr06:5917580..5917604 (25 bp)
ATGGCCTCCTACCATTCAGGAAGCA
LOC_Os06g11290
Os.8778.1.S1_a_at--709--10312Chr06:5917543..5917567 (25 bp)
TTTCATCGCTGCTGGCGGGTATGAC
LOC_Os06g11290
Os.8778.1.S1_a_at--759--10832Chr06:5917452..5917476 (25 bp)
TTGGCTAACCCTGACTTGCCGAGGA
LOC_Os06g11290
Os.8778.1.S1_a_at--450--3632Chr06:5917438..5917462 (25 bp)
CTTGCCGAGGAGGTTTGAGCTTGAC
LOC_Os06g11290
Os.8778.1.S1_a_at--320--10752Chr06:5917424..5917448 (25 bp)
TTGAGCTTGACGCACCATTGAACAG
LOC_Os06g11290
Os.8778.1.S1_a_at--932--5652Chr06:5917395..5917419 (25 bp)
GACAGGTCTACCTTTTATACACAGG
LOC_Os06g11290
Os.8778.1.S1_a_at--237--2191Chr06:5917377..5917401 (25 bp)
ACACAGGATCCCGTTGTTGGCTATA
LOC_Os06g11290
Os.8778.1.S1_a_at--186--6611Chr06:5917362..5917386 (25 bp)
GTTGGCTATACAGATTACCCTTTTC
LOC_Os06g11290
Os.8778.1.S1_a_at--986--6532Chr06:5917350..5917374 (25 bp)
GATTACCCTTTTCTTGAGGAGATTG
LOC_Os06g11290
Os.8778.1.S1_a_at--166--2031Chr06:5917311..5917335 (25 bp)
ACTACTTATGCTTAATTGTCACCTA
LOC_Os06g11290
Os.8778.1.S1_a_at--167--6472Chr06:5917233..5917257 (25 bp)
GATACGGACAAGCATGAATACATTT
LOC_Os06g11290
Target Sequence 
ATGGCCTCCTACCATTCAGGAAGCAGTTCAATGGCACTTTCATCGCTGCTGGCGGGTATGACCGGGAGGAAGGGAACAAG
GTGGTGGCTGATGGCTATGCCGATCTCGTCGCCTATGGGAGGCTCTTCTTGGCTAACCCTGACTTGCCGAGGAGGTTTGA
GCTTGACGCACCATTGAACAGGTATGACAGGTCTACCTTTTATACACAGGATCCCGTTGTTGGCTATACAGATTACCCTT
TTCTTGAGGAGATTGATGAGGAGTCAAGAACTACTTATGCTTAATTGTCACCTAAATAATCCAATTTTAGCCTATTATTT
GGATTAATAATGTAACACTTATCATGTGATACGGACAAGCATGAATACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8778.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis