Browse Element(s) Details


Os.54009.1.S1_at

Description gb:AK101267.1
DB_XREF= gi:32986476
TID=Os.54009.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032L21, full insert sequence.
FL= gb:AK101267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1130011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11300Os.54009.1.S1_at11/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11300OsAffx.20919.1.S1_x_at1/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11310Os.50764.1.S1_at10/116+5929406..5930985Plastocyanin-like domain containing protein, expressed
LOC_Os06g11320Os.15219.1.S1_at11/116+5932790..5938506peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54009.1.S1_at--634--2811Chr06:5921199..5921223 (25 bp)
AAGATTCTCGGGTGTCTCCTGCTTC
LOC_Os06g11300
Os.54009.1.S1_at--694--1771Chr06:5921111..5921135 (25 bp)
ACCGGATATCGGAGCTGGACCTGGA
LOC_Os06g11300
Os.54009.1.S1_at--931--9171Chr06:5921077..5921101 (25 bp)
TGCCTATGGCCTGTCCAACATGTAC
LOC_Os06g11300
Os.54009.1.S1_at--944--2491Chr06:5921061..5921085 (25 bp)
AACATGTACGCCTCGTTGCAGAGGT
LOC_Os06g11300
Os.54009.1.S1_at--709--411Chr06:5921033..5921057 (25 bp)
ATCATGTGGAGATGCACCGGATCAA
LOC_Os06g11300
Os.54009.1.S1_at--285--7771Chr06:5920996..5921020 (25 bp)
GGTGCGCCATAAGCAGCCTGGTCAG
LOC_Os06g11300
Os.54009.1.S1_at--679--1671Chr06:5920982..5921006 (25 bp)
AGCCTGGTCAGAGCAGCTGCATGAT
LOC_Os06g11300
Os.54009.1.S1_at--949--1591Chr06:5920968..5920992 (25 bp)
AGCTGCATGATCTAGCAGGCTGCAA
LOC_Os06g11300
Os.54009.1.S1_at--262--5471Chr06:5920943..5920967 (25 bp)
GAACTGAAGATTATTGCTAGCCTGG
LOC_Os06g11300
Os.54009.1.S1_at--162--9091Chr06:5920929..5920953 (25 bp)
TGCTAGCCTGGGATTGATGACAATT
LOC_Os06g11300
Os.54009.1.S1_at--138--3891Chr06:5920893..5920917 (25 bp)
CTGTCAATGATGTACCTGGTAGCTA
LOC_Os06g11300
Target Sequence 
AAGATTCTCGGGTGTCTCCTGCTTCACGCCCGCCGCTTGTCGTCGGCGTCGGAGGAGGACGGCGTCAGGGTGGGCGAGTG
GGTGGCGGACCGGATATCGGAGCTGGACCTGGACGACGGCGCTGCCTATGGCCTGTCCAACATGTACGCCTCGTTGCAGA
GGTGGGATCATGTGGAGATGCACCGGATCAAGGTGAACGCGGCGGTGCGCCATAAGCAGCCTGGTCAGAGCAGCTGCATG
ATCTAGCAGGCTGCAAGAACTGAAGATTATTGCTAGCCTGGGATTGATGACAATTGTCGTCAATTGCTGTCAATGATGTA
CCTGGTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis