Browse Element(s) Details


Os.15219.1.S1_at

Description gb:AK068112.1
DB_XREF= gi:32978130
TID=Os.15219.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134M21, full insert sequence.
FL= gb:AK068112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1132011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11300Os.54009.1.S1_at11/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11300OsAffx.20919.1.S1_x_at1/116+5920696..5922665pentatricopeptide, putative, expressed
LOC_Os06g11310Os.50764.1.S1_at10/116+5929406..5930985Plastocyanin-like domain containing protein, expressed
LOC_Os06g11320Os.15219.1.S1_at11/116+5932790..5938506peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os06g11330Os.49837.1.S1_a_at9/116+5951600..5962310SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0010050biological_processvegetative phase change
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15219.1.S1_at--508--2891Chr06:5934351..5934375 (25 bp)
AAGGGTGCTCTGTTGGATGCTGATT
LOC_Os06g11320
Os.15219.1.S1_at--274--4831Chr06:5934300..5934324 (25 bp)
GCTAAGGCATTTTTTCGACAAGGAC
LOC_Os06g11320
Os.15219.1.S1_at--771--9011Chr06:5933368..5933392 (25 bp)
TGCAAGGATGTTCCAACCTTCTGGA
LOC_Os06g11320
Os.15219.1.S1_at--546--6011Chr06:5933214..5933238 (25 bp)
GAGAGCAAGTGATCCCTAGTTTCCT
LOC_Os06g11320
Os.15219.1.S1_at--123--9471Chr06:5933161..5933185 (25 bp)
TCTGGGATACATACTGGAACCGTGA
LOC_Os06g11320
Os.15219.1.S1_at--307--351Chr06:5933045..5933069 (25 bp)
ATAACAAGGGAGTCTGCGCAGCTAA
LOC_Os06g11320
Os.15219.1.S1_at--1142--9791Chr06:5933023..5933047 (25 bp)
TAACGCAAAAGACGCTGACTCCCTA
LOC_Os06g11320
Os.15219.1.S1_at--769--4131Chr06:5933011..5933035 (25 bp)
CGCTGACTCCCTATCTAGATACAAG
LOC_Os06g11320
Os.15219.1.S1_at--62--6031Chr06:5932969..5932993 (25 bp)
GAGAGGATAGCCTTTGTTTTTCTTT
LOC_Os06g11320
Os.15219.1.S1_at--740--5451Chr06:5932891..5932915 (25 bp)
GAACTGAACAGCACGGTTTCCACTT
LOC_Os06g11320
Os.15219.1.S1_at--598--7871Chr06:5932877..5932901 (25 bp)
GGTTTCCACTTTTCAGACTTTGCTG
LOC_Os06g11320
Target Sequence 
AAGGGTGCTCTGTTGGATGCTGATTTNGCACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAGGACAGGC
ACACNTTGCACTCAATGACATTGATGCGGCAGTGGAGAGCTTCAAGCATGCATTGGAGTTGGAGCCAAGTGATGGAGGAA
TTAAACGAGAGCTAGCTGCTGCAAAGAAGAAGATTGCCGACAGAAGGAATCAGGAGCGGAAGGCATTTGCAAGGATGTTC
CAACCTTCTGGAAAATCAGACAAAGACAATGAAGAGAGCAAGTGATCCCTAGTTTCCTTTCCCCGGCAGAACTTTTGGTA
GCTTGATCTGGGATACATACTGGAACCGTGAAGAGGGTATAACAAGGGAGTCTGCGCAGCTAACGCAAAAGACGCTGACT
CCCTATCTAGATACAAGGAAAAAAAATAGTGGGGGAGAGGATAGCCTTTGTTTTTCTTTTGCATTACTACAAAAGTAATT
GTGCGTATCAACGCTGTTAAAGCCGAGACATTGAACTGAACAGCACGGTTTCCACTTTTCAGACTTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis