Browse Element(s) Details


Os.47914.1.S1_at

Description gb:AK061212.1
DB_XREF= gi:32971230
TID=Os.47914.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.47914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D07, full insert sequence.
FL= gb:AK104256.1 gb:AK061212.1 gb:AK104039.1 gb:AK104193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1121011/1112-oxophytodienoate reductase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11170Os.10676.1.S1_a_at11/116+5856427..5860126U1 zinc finger family protein, expressed
LOC_Os06g11180Os.5813.1.S1_at11/116+5861189..5868597prolyl oligopeptidase family protein, expressed
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47914.1.S1_at--965--8411Chr06:5884038..5884062 (25 bp)
GGCCTGCTGCCATTCAGGAAAGCTT
LOC_Os06g11210
Os.47914.1.S1_at--789--5551Chr06:5884021..5884045 (25 bp)
GAAAGCTTTCAAGGGCACGTTCATC
LOC_Os06g11210
Os.47914.1.S1_at--1099--9851Chr06:5883945..5883969 (25 bp)
TACACTGATCTTGTCTCCTTTGGAA
LOC_Os06g11210
Os.47914.1.S1_at--348--8511Chr06:5883925..5883949 (25 bp)
TGGAAGGCTTTTCTTGGCGAACCCT
LOC_Os06g11210
Os.47914.1.S1_at--693--4591Chr06:5883909..5883933 (25 bp)
GCGAACCCTGACTTGCCTAAGAGGT
LOC_Os06g11210
Os.47914.1.S1_at--547--1011Chr06:5883888..5883912 (25 bp)
AGGTTCGAGCTTGATGCGCCATTGA
LOC_Os06g11210
Os.47914.1.S1_at--1058--5491Chr06:5883865..5883889 (25 bp)
GAACAAGTATGATCGCAACACCTTC
LOC_Os06g11210
Os.47914.1.S1_at--640--51Chr06:5883825..5883849 (25 bp)
ATTGTTGGATACACGGACTACCCTT
LOC_Os06g11210
Os.47914.1.S1_at--261--8131Chr06:5883811..5883835 (25 bp)
GGACTACCCTTTCCTCGATGAGGAT
LOC_Os06g11210
Os.47914.1.S1_at--259--3271Chr06:5883781..5883805 (25 bp)
CAACTCGGTTGCTGATGCTTAGATT
LOC_Os06g11210
Os.47914.1.S1_at--343--6891Chr06:5883686..5883710 (25 bp)
GTATATGCCTGCGTGCAAGATGTCA
LOC_Os06g11210
Target Sequence 
GGCCTGCTGCCATTCAGGAAAGCTTTCAAGGGCACGTTCATCGCCGCCGGTGGGTATGACCGGGAGGAAGGCAACAAGGT
GATCGAAAATGGCTACACTGATCTTGTCTCCTTTGGAAGGCTTTTCTTGGCGAACCCTGACTTGCCTAAGAGGTTCGAGC
TTGATGCGCCATTGAACAAGTATGATCGCAACACCTTCTACACTCAAGACCCAATTGTTGGATACACGGACTACCCTTTC
CTCGATGAGGATCAGAACAACTCGGTTGCTGATGCTTAGATTTTGTGCTATTTTAGTTGTTGGTTCTATATATCCACAAT
AATAATGTGCACGATTCATGTAAACAGTGTTAGTATATGCCTGCGTGCAAGATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis