Browse Element(s) Details


Os.10676.1.S1_a_at

Description gb:AK065717.1
DB_XREF= gi:32975735
TID=Os.10676.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038O15, full insert sequence.
FL= gb:AK065717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1117011/11U1 zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11120OsAffx.4798.1.S1_x_at10/116+5829907..5832224hypothetical protein
LOC_Os06g11120OsAffx.24637.2.S1_x_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11120Os.50619.1.S1_x_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11120OsAffx.13605.1.S1_x_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11120Os.50619.1.S1_at1/116+5829907..5832224hypothetical protein
LOC_Os06g11130Os.21839.1.S1_at9/116+5834563..58361072-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os06g11140Os.49084.1.S1_at10/116+5839159..5843518NADH dehydrogenase, putative, expressed
LOC_Os06g11150NANA6+5847361..5848608hypothetical protein
LOC_Os06g11160OsAffx.27668.1.S1_at1/116+5853314..5853670hypothetical protein
LOC_Os06g11170Os.10676.1.S1_a_at11/116+5856427..5860126U1 zinc finger family protein, expressed
LOC_Os06g11180Os.5813.1.S1_at11/116+5861189..5868597prolyl oligopeptidase family protein, expressed
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10676.1.S1_a_at--850--4711Chr06:5856992..5857016 (25 bp)
GCTGGGCAATCCTCAAGTTCACAAA
LOC_Os06g11170
Os.10676.1.S1_a_at--35--1231Chr06:5856951..5856975 (25 bp)
AGTTGCGACTGTCCCCACAATTAAA
LOC_Os06g11170
Os.10676.1.S1_a_at--236--3251Chr06:5856920..5856944 (25 bp)
CAAGCTCCAGGTTTGGTCGTCAAGA
LOC_Os06g11170
Os.10676.1.S1_a_at--510--4311Chr06:5856860..5856884 (25 bp)
CCATCCGCCATTGCTGTTAACAAGA
LOC_Os06g11170
Os.10676.1.S1_a_at--890--8111Chr06:5856825..5856849 (25 bp)
GGACGGCAAGCCCAAAGTGATCTCA
LOC_Os06g11170
Os.10676.1.S1_a_at--296--5411Chr06:5856791..5856815 (25 bp)
GAAGCCGCCCTTAAAGCGCGTGAAG
LOC_Os06g11170
Os.10676.1.S1_a_at--719--7551Chr06:5856703..5856727 (25 bp)
GGGCCTCCCCATAAGAAATGCTAAT
LOC_Os06g11170
Os.10676.1.S1_a_at--188--9731Chr06:5856625..5856649 (25 bp)
TCAAGAGCGTCTTCTGCATCAGGGA
LOC_Os06g11170
Os.10676.1.S1_a_at--980--7931Chr06:5856551..5856575 (25 bp)
GGATAAATTCCCTTTCCTGAAACTG
LOC_Os06g11170
Os.10676.1.S1_a_at--807--7011Chr06:5856506..5856530 (25 bp)
GTACTATACATTCGTCAGCATTTCT
LOC_Os06g11170
Os.10676.1.S1_a_at--516--191Chr06:5856487..5856511 (25 bp)
ATTTCTTTTGCTCTTTCACACTGGA
LOC_Os06g11170
Target Sequence 
GCTGGGCAATCCTCAAGTTCACAAACAAAACCAACTGCTTCAGTTGCGACTGTCCCCACAATTAAAGGGGGCCAAGCTCC
AGGTTTGGTCGTCAAGAAACCACTGAATCCGATGAGAACTGTAAAGGGTGCTCCATCCGCCATTGCTGTTAACAAGAGAA
AAAGAGAGGACGGCAAGCCCAAAGTGATCTCAAAGGAGGAGGAAGCCGCCCTTAAAGCGCGTGAAGCAGCAAGAAAAAGA
ATGGAGGATAGGGAGAAGCCCTTAATGGGACTATACAGATCGTACTAAGGGGCCTCCCCATAAGAAATGCTAATGGATGG
ATTGTTCTGTAAAAGAAGATTTGCGAGATTATTAGCGTTGGGTGTCTTCAAGAGCGTCTTCTGCATCAGGGAAGCATGTC
TGTAGTGTACAATATCTCTGGTACCAACAATATCCTGAATTGGATAAATTCCCTTTCCTGAAACTGTTATCTGTGAAACA
TGTAAAGTACTATACATTCGTCAGCATTTCTTTTGCTCTTTCACACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10676.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis