Browse Element(s) Details


OsAffx.13605.1.S1_x_at

Description tigr:9632.m00017
TID=OsAffx.13605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0116011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g111201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01130Os.39952.1.S1_at11/114+79564..88464MRG family protein, expressed
LOC_Os04g01130Os.7943.3.S1_s_at8/114+79564..88464MRG family protein, expressed
LOC_Os04g01130OsAffx.31293.1.S1_at2/114+79564..88464MRG family protein, expressed
LOC_Os04g01140Os.8511.1.S1_s_at11/114+90337..92174Cytochrome P450 family protein, expressed
LOC_Os04g01150Os.8082.1.S1_at11/114+106160..110245phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g01160OsAffx.13605.1.S1_x_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01160OsAffx.13605.1.S1_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01170OsAffx.3692.1.S1_at11/114+119142..119822hypothetical protein
LOC_Os04g01180NANA4+127816..129126retrotransposon protein, putative, LINE subclass
LOC_Os04g01190OsAffx.1647.1.S1_at3/114+132206..134401retrotransposon protein, putative, unclassified
LOC_Os04g01190OsAffx.20565.1.S1_at1/114+132206..134401retrotransposon protein, putative, unclassified
LOC_Os04g01200OsAffx.22722.1.S1_x_at1/114+134743..137175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01210NANA4+137960..140325retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13605.1.S1_x_at--817--6111Chr04:113025..113049 (25 bp)
GAGTGTCTCCCTGGGCGAGATGTAC
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--872--9471Chr04:113020..113044 (25 bp)
TCTCCCTGGGCGAGATGTACGCGGA
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--164--8711Chr04:112933..112957 (25 bp)
TGTCCGTGCGGTGCAGCTACCGTGA
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--144--5071Chr04:112921..112945 (25 bp)
GCAGCTACCGTGAGCCGGCGTCGCA
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--751--1512Chr06:5832270..5832294 (25 bp)
AGCAGCTGGTGGTGCCGGCCCTCCA
NONE
OsAffx.13605.1.S1_x_at--1053--1851Chr04:112822..112846 (25 bp)
ACGACCTGTTCGTGGCGACACGGGC
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--1--5912Chr06:5832173..5832193 (21 bp)
GAGCTGAACGACTACGCGACGGCCA
LOC_Os06g11120
OsAffx.13605.1.S1_x_at--789--4471Chr04:112684..112708 (25 bp)
GCCTGGACACGGAGCTGAGCGACAT
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--554--1611Chr04:112672..112696 (25 bp)
AGCTGAGCGACATGCGGTGGCGGCG
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--82--4391Chr04:112526..112550 (25 bp)
GCCAAGGTGGCCATCATGCGCAAGT
LOC_Os04g01160
OsAffx.13605.1.S1_x_at--25--611Chr04:112511..112535 (25 bp)
ATGCGCAAGTCCATGAACCGTGTCA
LOC_Os04g01160
Target Sequence 
GAGTGTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCTGCGCGCGCCGCTGAGCCAGAGCC
ACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGAGCCGGCGTCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTG
GTGGTGCCGGCCCTCCACGGCGGGAGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGAGTC
GCGGCGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGCGCGGGCGGTGGTGGTGCAGTCGG
CGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCTGAGCGACATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGG
CGTGGCGGCGAGTCGGAGGAGACTCCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGCGTG
GCGCGCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13605.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis