Browse Element(s) Details


Os.39952.1.S1_at

Description gb:CB627192
DB_XREF= gi:29622181
DB_XREF=OSIIEb01P13.r
CLONE=OSIIEb01P13
TID=Os.39952.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39952 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568021.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0113011/11MRG family protein, expressed
LOC_Os11g343005/11MRG family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01080NANA4+53570..55208hypothetical protein
LOC_Os04g01089OsAffx.31844.1.S1_at4/114+57408..58289NA
LOC_Os04g01089OsAffx.2606.1.S1_at2/114+57408..58289NA
LOC_Os04g01089OsAffx.1436.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01089OsAffx.8939.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01100NANA4+60275..61237hAT family dimerisation domain containing protein
LOC_Os04g01110NANA4+61795..63463BED zinc finger family protein
LOC_Os04g01120NANA4+64513..67460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01124OsAffx.25819.3.S1_at11/114+73522..74064hypothetical protein
LOC_Os04g01124OsAffx.25819.1.S1_at1/114+73522..74064hypothetical protein
LOC_Os04g01130Os.39952.1.S1_at11/114+79564..88464MRG family protein, expressed
LOC_Os04g01130Os.7943.3.S1_s_at8/114+79564..88464MRG family protein, expressed
LOC_Os04g01130OsAffx.31293.1.S1_at2/114+79564..88464MRG family protein, expressed
LOC_Os04g01140Os.8511.1.S1_s_at11/114+90337..92174Cytochrome P450 family protein, expressed
LOC_Os04g01150Os.8082.1.S1_at11/114+106160..110245phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g01160OsAffx.13605.1.S1_x_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01160OsAffx.13605.1.S1_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39952.1.S1_at--535--2432Chr04:86644..86668 (25 bp)
AAAACCTATTTGCATCATCTGTGTC
LOC_Os04g01130
Os.39952.1.S1_at--170--1752Chr04:86647..86671 (25 bp)
ACCTATTTGCATCATCTGTGTCTGT
LOC_Os04g01130
Os.39952.1.S1_at--525--212Chr04:86651..86675 (25 bp)
ATTTGCATCATCTGTGTCTGTCAAG
LOC_Os04g01130
Os.39952.1.S1_at--579--4972Chr04:86655..86679 (25 bp)
GCATCATCTGTGTCTGTCAAGATTT
LOC_Os04g01130
Os.39952.1.S1_at--598--9611Chr04:86658..86682 (25 bp)
TCATCTGTGTCTGTCAAGATTTTTT
LOC_Os04g01130
Os.39952.1.S1_at--141--2512Chr04:86720..86744 (25 bp)
AACTTTGTATTGTTTGTACTGAAGG
LOC_Os04g01130
Os.39952.1.S1_at--246--5311Chr04:86740..86764 (25 bp)
GAAGGATAAATGACTCTTATGCTGA
LOC_Os04g01130
Os.39952.1.S1_at--75--2571Chr04:88187..88211 (25 bp)
AACTGTCTCGCTGTGTTATTTTAAA
LOC_Os04g01130
Os.39952.1.S1_at--49--7171Chr04:88191..88215 (25 bp)
GTCTCGCTGTGTTATTTTAAATTTT
LOC_Os04g01130
Os.39952.1.S1_at--407--3011Chr04:88236..88260 (25 bp)
AATGAACATCACAACACTGTTTGCT
LOC_Os04g01130
Os.39952.1.S1_at--700--2471Chr04:88248..88272 (25 bp)
AACACTGTTTGCTAATTCATGTAGT
LOC_Os04g01130
Target Sequence 
AAAACCTATTTGCATCATCTGTGTCTGTCAAGATTTTTTTTTAAAAAAAAATATTTTTCTTGAAAAGACCCACTAAAACT
TTGTATTGTTTGTACTGAAGGATAAATGACTCTTATGCTGAGATTTTGAAAGGATTGCGATGCTACTTTGATAAAGCATT
GCCTGCAANNCTTTTATATAAGAAAGAACNACAGCAGTACACTGAAGAGGTTAAAGGTGATGTTTCGCCCTCAATTATAT
ATGGAGCCGAGCATCTACTGCGCCTTTTTGTGAAATTGCCGGAGCTACTTGCGTCTGTTAACATGGAAGAAGATGCACTN
AACAAACTACAGCAGAAATTGCTGGACATTNCTCAAGTTTCTGCAGAAGAACCAGAGTTCGTTCTTCCTTTCTGCGTATG
ATGGNTGGTTCTAAAGGTACTGATGGGATAAAGNCCAAATAGANGCAAACTGTTGCATCTGTATGTTGNCTGTACTTAAC
TGTCTCGCTGTGTTATTTTAAATTTTTATTTGNTTGCACAATGGTNAATGAACATCACAACACTGTTTGCTAATTCATGT
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis