Browse Element(s) Details


Os.8511.1.S1_s_at

Description gb:AK100972.1
DB_XREF= gi:32986181
TID=Os.8511.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143C19, full insert sequence.
FL= gb:AK105745.1 gb:AK100972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0114011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01120NANA4+64513..67460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01124OsAffx.25819.3.S1_at11/114+73522..74064hypothetical protein
LOC_Os04g01124OsAffx.25819.1.S1_at1/114+73522..74064hypothetical protein
LOC_Os04g01130Os.39952.1.S1_at11/114+79564..88464MRG family protein, expressed
LOC_Os04g01130Os.7943.3.S1_s_at8/114+79564..88464MRG family protein, expressed
LOC_Os04g01130OsAffx.31293.1.S1_at2/114+79564..88464MRG family protein, expressed
LOC_Os04g01140Os.8511.1.S1_s_at11/114+90337..92174Cytochrome P450 family protein, expressed
LOC_Os04g01150Os.8082.1.S1_at11/114+106160..110245phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g01160OsAffx.13605.1.S1_x_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01160OsAffx.13605.1.S1_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8511.1.S1_s_at--654--4051Chr04:90908..90932 (25 bp)
CGATCGCGCACAGGCAGTCGACGGA
LOC_Os04g01140
Os.8511.1.S1_s_at--1140--971Chr04:90884..90908 (25 bp)
AGGAGATCCAGATCCGAGGGTTCAG
LOC_Os04g01140
Os.8511.1.S1_s_at--11--7611Chr04:90726..90750 (25 bp)
GGGCAGCACTTCCAGTTCATGCCGT
LOC_Os04g01140
Os.8511.1.S1_s_at--488--3451Chr04:90624..90648 (25 bp)
CAGTGCTTCGATTGGCAGTGCATGG
LOC_Os04g01140
Os.8511.1.S1_s_at--530--8271Chr04:90611..90635 (25 bp)
GGCAGTGCATGGACAATAAGTTGAT
LOC_Os04g01140
Os.8511.1.S1_s_at--1070--3411Chr04:90572..90596 (25 bp)
CAGACGGCCTGGTTTGCGCTCGGAA
LOC_Os04g01140
Os.8511.1.S1_s_at--106--7871Chr04:90562..90586 (25 bp)
GGTTTGCGCTCGGAAGCATCGCCTC
LOC_Os04g01140
Os.8511.1.S1_s_at--23--11Chr04:90453..90477 (25 bp)
GTCCCTGTAACGCACCGTAATACAA
LOC_Os04g01140
Os.8511.1.S1_s_at--1092--2971Chr04:90387..90411 (25 bp)
AATGTGTATGTATTCCCTACCTAGA
LOC_Os04g01140
Os.8511.1.S1_s_at--137--10191Chr04:90377..90401 (25 bp)
TATTCCCTACCTAGACCTATTGCAT
LOC_Os04g01140
Os.8511.1.S1_s_at--1036--5831Chr04:90364..90388 (25 bp)
GACCTATTGCATGTCTCTCAAATCA
LOC_Os04g01140
Target Sequence 
CGATCGCGCACAGGCAGTCGACGGAGGAGATCCAGATCCGAGGGTTCAGGGTGCCGGCGCAGACGGCGGTGTTCATCAAC
GTGTGGGCCATCGGGCGAGACCCGGCGTACTGGGAGGAGCCGCTGGAGTTCAGGCCGGAGCGGTTCCTCGCCGGCGGCGG
CGGCGAGGGCGTGGAGCCGCGCGGGCAGCACTTCCAGTTCATGCCGTTCGGGAGCGGCCGGCGCGGGTGCCCCGGGATGG
GGCTTGCGCTGCAGTCGGTGCCGGCGGTGGTGGCGGCGCTGCTGCAGTGCTTCGATTGGCAGTGCATGGACAATAAGTTG
ATAGACATGGAGGAGGCAGACGGCCTGGTTTGCGCTCGGAAGCATCGCCTCCTCCTCCACGCCCACCCGCGCCTCCACCC
TTTCCCGCCGCTCCTCTAGCTACCCCTACCTACCTACCACTCCTACTCCTTTCCTGTCCCTGTAACGCACCGTAATACAA
CCATTATAAATTAATTACCACTTTACTATATTGTAATAATTAATGTGTATGTATTCCCTACCTAGACCTATTGCATGTCT
CTCAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8511.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis