Browse Element(s) Details


OsAffx.3692.1.S1_at

Description tigr:9632.m00018
TID=OsAffx.3692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0117011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01150Os.8082.1.S1_at11/114+106160..110245phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g01160OsAffx.13605.1.S1_x_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01160OsAffx.13605.1.S1_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01170OsAffx.3692.1.S1_at11/114+119142..119822hypothetical protein
LOC_Os04g01180NANA4+127816..129126retrotransposon protein, putative, LINE subclass
LOC_Os04g01190OsAffx.1647.1.S1_at3/114+132206..134401retrotransposon protein, putative, unclassified
LOC_Os04g01190OsAffx.20565.1.S1_at1/114+132206..134401retrotransposon protein, putative, unclassified
LOC_Os04g01200OsAffx.22722.1.S1_x_at1/114+134743..137175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01210NANA4+137960..140325retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3692.1.S1_at--441--1951Chr04:119746..119770 (25 bp)
ACGGCCTTCCAGGATGGAGGCAGAC
LOC_Os04g01170
OsAffx.3692.1.S1_at--1103--1391Chr04:119725..119749 (25 bp)
AGACGGCGGCTGTAGCCTCCCAAGA
LOC_Os04g01170
OsAffx.3692.1.S1_at--994--9971Chr04:119713..119737 (25 bp)
TAGCCTCCCAAGATTCACGATGGAC
LOC_Os04g01170
OsAffx.3692.1.S1_at--67--4471Chr04:119711..119735 (25 bp)
GCCTCCCAAGATTCACGATGGACAC
LOC_Os04g01170
OsAffx.3692.1.S1_at--93--3231Chr04:119705..119729 (25 bp)
CAAGATTCACGATGGACACGCCTCC
LOC_Os04g01170
OsAffx.3692.1.S1_at--888--6231Chr04:119695..119719 (25 bp)
GATGGACACGCCTCCCACATATGGA
LOC_Os04g01170
OsAffx.3692.1.S1_at--600--5631Chr04:119691..119715 (25 bp)
GACACGCCTCCCACATATGGAGGAG
LOC_Os04g01170
OsAffx.3692.1.S1_at--970--1811Chr04:119688..119712 (25 bp)
ACGCCTCCCACATATGGAGGAGAAG
LOC_Os04g01170
OsAffx.3692.1.S1_at--58--4291Chr04:119643..119667 (25 bp)
CCTCCTCTCGCTCGGAGGAAGAATG
LOC_Os04g01170
OsAffx.3692.1.S1_at--826--3751Chr04:119639..119663 (25 bp)
CTCTCGCTCGGAGGAAGAATGGAAG
LOC_Os04g01170
OsAffx.3692.1.S1_at--18--6591Chr04:119216..119636 (25 bp)
GATTGCGGCAGATGGGAAAAACGTA
LOC_Os04g01170
Target Sequence 
ACGGCCTTCCAGGATGGAGGCAGACGGCGGCTGTAGCCTCCCAAGATTCACGATGGACACGCCTCCCACATATGGAGGAG
AAGGGCAGCGGTGGCCGACGGTGCCTCCTCTCGCTCGGAGGAAGAATGGAAGAGGATTGCGGCAGATGGGAAAAACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis