Browse Element(s) Details

Os.49084.1.S1_at

Description

gb:AK064752.1
DB_XREF= gi:32974770
TID=Os.49084.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F09, full insert sequence.
FL= gb:AK064752.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g11140	10/11	NADH dehydrogenase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g11090	Os.49572.1.A1_at	11/11	6	+	5812498..5814197	esterase, putative, expressed
LOC_Os06g11100	OsAffx.22063.1.S1_at	1/11	6	+	5816259..5819852	retrotransposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.20729.1.S1_x_at	4/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_x_at	2/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.3.S1_x_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.2022.1.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11120	OsAffx.4798.1.S1_x_at	10/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.24637.2.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.13605.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11130	Os.21839.1.S1_at	9/11	6	+	5834563..5836107	2-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os06g11140	Os.49084.1.S1_at	10/11	6	+	5839159..5843518	NADH dehydrogenase, putative, expressed
LOC_Os06g11150	NA	NA	6	+	5847361..5848608	hypothetical protein
LOC_Os06g11160	OsAffx.27668.1.S1_at	1/11	6	+	5853314..5853670	hypothetical protein
LOC_Os06g11170	Os.10676.1.S1_a_at	11/11	6	+	5856427..5860126	U1 zinc finger family protein, expressed
LOC_Os06g11180	Os.5813.1.S1_at	11/11	6	+	5861189..5868597	prolyl oligopeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0003954	molecular_function	NADH dehydrogenase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49084.1.S1_at--73--599	1	Chr06:5840007..5840031 (25 bp)	GAGACTGAGGAAACCCTTCAGGTAA	LOC_Os06g11140
Os.49084.1.S1_at--50--231	1	Chr06:5839983..5840007 (25 bp)	AAAGGCCATCCTCGAACTTTTGCAA	LOC_Os06g11140
Os.49084.1.S1_at--73--507	1	Chr06:5839947..5839971 (25 bp)	GCAGCTCTAAGAGACCCATCAGGCA	LOC_Os06g11140
Os.49084.1.S1_at--304--17	1	Chr06:5839801..5839825 (25 bp)	ATTTTGCTGGATGGAATCTCTGGGC	LOC_Os06g11140
Os.49084.1.S1_at--428--863	1	Chr06:5839781..5839805 (25 bp)	TGGGCAGCAATCAATGACCGACCTC	LOC_Os06g11140
Os.49084.1.S1_at--1148--515	1	Chr06:5839545..5839569 (25 bp)	GCAAGCTTTATTGAGGGCCTGACCT	LOC_Os06g11140
Os.49084.1.S1_at--849--611	1	Chr06:5839533..5839557 (25 bp)	GAGGGCCTGACCTTGGAAGGACCTT	LOC_Os06g11140
Os.49084.1.S1_at--277--531	1	NONE	GAAGGACCTTTAGGGCATGCTGCTA	NONE
Os.49084.1.S1_at--935--819	1	Chr06:5839412..5839436 (25 bp)	GGAAGATTGTATACTGCCTTAGGAT	LOC_Os06g11140
Os.49084.1.S1_at--256--431	1	Chr06:5839396..5839420 (25 bp)	CCTTAGGATGCCCACAGATGAACAT	LOC_Os06g11140
Os.49084.1.S1_at--95--763	1	Chr06:5839238..5839262 (25 bp)	GGGAAAGTATCAACCTCTGAGTCAA	LOC_Os06g11140

Target Sequence

GAGACTGAGGAAACCCTTCAGGTAAAAGGCCATCCTCGAACTTTTGCAANTCGGTGATTCAGCAGCTCTAAGAGACCCAT
CAGGCAAACTTCTCCCAGCCACTGCACAGGTTGCTTNTCAACNAGNAGATTTTGCTGGATGGAATCTCTGGGCAGCAATC
AATGACCGACCTCTTCTGCCATTCAGGTTTCAAAATCTTGGTGAGATGATGACACTTGGTAGAAGTGATGCTGCGATAAC
AGCAAGCTTTATTGAGGGCCTGACCTTGGAAGGACCTTTAGGGCATGCTGCTAGGAAGATTGTATACTGCCTTAGGATGC
CCACAGATGAACATCGAGTGAAGGTTGGAATCAGTTGGTTCACAAAGACTGCAGTTGATTCACTTGCNTCCCTGCAAAAC
GCAGTAAGTAGCATGCTAACAAGCCCATGACAATAACATTGTCTATGTTACACTATGTATGGAAACTGGGAAAGTATCAA
CCTCTGAGTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis