Browse Element(s) Details

OsAffx.4798.1.S1_x_at

Description

tigr:9634.m01084
TID=OsAffx.4798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g11120	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g11070	Os.23461.1.A1_at	11/11	6	+	5806277..5810130	expressed protein
LOC_Os06g11070	OsAffx.4796.1.S1_s_at	11/11	6	+	5806277..5810130	expressed protein
LOC_Os06g11080	OsAffx.4797.1.S1_at	11/11	6	+	5811592..5812001	hypothetical protein
LOC_Os06g11090	Os.49572.1.A1_at	11/11	6	+	5812498..5814197	esterase, putative, expressed
LOC_Os06g11100	OsAffx.22063.1.S1_at	1/11	6	+	5816259..5819852	retrotransposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.20729.1.S1_x_at	4/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_x_at	2/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.3.S1_x_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.2022.1.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11120	OsAffx.4798.1.S1_x_at	10/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.24637.2.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.13605.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11130	Os.21839.1.S1_at	9/11	6	+	5834563..5836107	2-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os06g11140	Os.49084.1.S1_at	10/11	6	+	5839159..5843518	NADH dehydrogenase, putative, expressed
LOC_Os06g11150	NA	NA	6	+	5847361..5848608	hypothetical protein
LOC_Os06g11160	OsAffx.27668.1.S1_at	1/11	6	+	5853314..5853670	hypothetical protein
LOC_Os06g11170	Os.10676.1.S1_a_at	11/11	6	+	5856427..5860126	U1 zinc finger family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4798.1.S1_x_at--432--865	1	Chr06:5830615..5831130 (25 bp)	TGGGCATATGGTCCTATAGGCTCTT	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--591--759	1	Chr06:5830614..5831129 (25 bp)	GGGCATATGGTCCTATAGGCTCTTG	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--209--829	1	Chr06:5830613..5830633 (21 bp)	GGCATATGGTCCTATAGGCTCTTGC	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--1077--495	1	Chr06:5830612..5830633 (22 bp)	GCATATGGTCCTATAGGCTCTTGCT	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--1000--357	1	Chr06:5830611..5830633 (23 bp)	CATATGGTCCTATAGGCTCTTGCTA	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--733--27	1	Chr06:5830610..5830633 (24 bp)	ATATGGTCCTATAGGCTCTTGCTAT	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--319--1019	1	Chr06:5830601..5830625 (25 bp)	TATAGGCTCTTGCTATCCTGTAACC	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--238--1073	1	Chr06:5830592..5830616 (25 bp)	TTGCTATCCTGTAACCGCTGGTGTA	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--475--261	1	Chr06:5830580..5830604 (25 bp)	AACCGCTGGTGTATTAATCGCCAAG	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--728--439	1	Chr06:5830561..5830585 (25 bp)	GCCAAGGAACTTGAGCAGGCTGTAA	LOC_Os06g11120
OsAffx.4798.1.S1_x_at--181--151	1	NONE	AGCAGGCTGTAACGGCAAAGGTATT	NONE

Target Sequence

TGGGCATATGGTCCTATAGGCTCTTGCTATCCTGTAACCGCTGGTGTATTAATCGCCAAGGAACTTGAGCAGGCTGTAAC
GGCAAAGGTATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis