Browse Element(s) Details


Os.5813.1.S1_at

Description gb:AK066061.1
DB_XREF= gi:32976079
TID=Os.5813.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050C22, full insert sequence.
FL= gb:AK066061.1 gb:AK106301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1118011/11prolyl oligopeptidase family protein, expressed
LOC_Os06g400201/11DEAD-box protein 3, Y-chromosomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11140Os.49084.1.S1_at10/116+5839159..5843518NADH dehydrogenase, putative, expressed
LOC_Os06g11150NANA6+5847361..5848608hypothetical protein
LOC_Os06g11160OsAffx.27668.1.S1_at1/116+5853314..5853670hypothetical protein
LOC_Os06g11170Os.10676.1.S1_a_at11/116+5856427..5860126U1 zinc finger family protein, expressed
LOC_Os06g11180Os.5813.1.S1_at11/116+5861189..5868597prolyl oligopeptidase family protein, expressed
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5813.1.S1_at--2--6111Chr06:5862712..5862736 (25 bp)
GAGTCTCACTATACTGACAATCTTG
LOC_Os06g11180
Os.5813.1.S1_at--633--3031Chr06:5861726..5861748 (23 bp)
TAAGGTAGTCCCACCAGATCAGGCA
LOC_Os06g11180
Os.5813.1.S1_at--23--9191Chr06:5861667..5861691 (25 bp)
TGCCTGTTGCCTTGGTGGAATACGA
LOC_Os06g11180
Os.5813.1.S1_at--181--7411Chr06:5861481..5861505 (25 bp)
GTGTTCTTTGCTCGATTAGTCGGGA
LOC_Os06g11180
Os.5813.1.S1_at--426--5531Chr06:5861418..5861442 (25 bp)
GAAAACTTTGACTGATCGCTCGAAG
LOC_Os06g11180
Os.5813.1.S1_at--627--5011Chr06:5861385..5861409 (25 bp)
GCAGTAGCTTACATTTCGTGGAACA
LOC_Os06g11180
Os.5813.1.S1_at--368--5492Chr06:23808707..23808858 (25 bp)
GAACATGACCTCTTACAGTTTGCAT
LOC_Os06g40020
Os.5813.1.S1_at--209--1211Chr06:5861349..5861373 (25 bp)
AGTTTGCATCTGTTTGAATTGTCCA
LOC_Os06g11180
Os.5813.1.S1_at--134--5211Chr06:5861334..5861358 (25 bp)
GAATTGTCCATGTACTCCGACTAAA
LOC_Os06g11180
Os.5813.1.S1_at--753--8151Chr06:5861249..5861273 (25 bp)
GGAAACTCCAGAAATCGCCCATATT
LOC_Os06g11180
Os.5813.1.S1_at--9--8071Chr06:5861216..5861240 (25 bp)
GGAGACACATCCATACCTAACTTTA
LOC_Os06g11180
Target Sequence 
GAGTCTCACTATACTGACAATCTTGTAGGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATT
TACATGTCCAGTTATTTTGTTTCAAGGCTTGGATGATAAGGTAGTCCCACCAGATCAGGCACGCAAAATATACAAGGCCT
TAAAAGAGAAAGGTTTGCCTGTTGCCTTGGTGGAATACGAAGGAGAGCAGCATGGTTTCCGCAAGGCTGAGAACATCAAG
TTTACTTTGGAGCAGCAGATGGTGTTCTTTGCTCGATTAGTCGGGAATTTTAAGGTGGCAGATGATATAACTCCAATCAA
GATCGAAAACTTTGACTGATCGCTCGAAGAAAGTGTAGCAGTAGCTTACATTTCGTGGAACATGACCTCTTACAGTTTGC
ATCTGTTTGAATTGTCCATGTACTCCGACTAAANGTTCATTAAAATCAATCAATGTTGGAGTCTGGGGCAATGGAATCGC
ATATTTGAGTTTCGGAAACTCCAGAAATCGCCCATATTAGGCAACAGGAGACACATCCATACCTAACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis