Browse Element(s) Details


Os.27029.1.S1_at

Description gb:AK101083.1
DB_XREF= gi:32986292
TID=Os.27029.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024G11, full insert sequence.
FL= gb:AK101083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1119011/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11150NANA6+5847361..5848608hypothetical protein
LOC_Os06g11160OsAffx.27668.1.S1_at1/116+5853314..5853670hypothetical protein
LOC_Os06g11170Os.10676.1.S1_a_at11/116+5856427..5860126U1 zinc finger family protein, expressed
LOC_Os06g11180Os.5813.1.S1_at11/116+5861189..5868597prolyl oligopeptidase family protein, expressed
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27029.1.S1_at--450--7451Chr06:5869784..5869808 (25 bp)
GTGTCACCAGTTCAGGCAACGACGA
LOC_Os06g11190
Os.27029.1.S1_at--423--2931Chr06:5869745..5869769 (25 bp)
AAGGACAAAGGCCTTCCTGTTGCTT
LOC_Os06g11190
Os.27029.1.S1_at--1095--10651Chr06:5869732..5869756 (25 bp)
TTCCTGTTGCTTTGGTCGAGTATGA
LOC_Os06g11190
Os.27029.1.S1_at--963--6311Chr06:5869355..5869379 (25 bp)
GATGAACCCTCCTTGTAAGCGTTAA
LOC_Os06g11190
Os.27029.1.S1_at--121--10231Chr06:5869325..5869349 (25 bp)
TATTCGTCACCTAATCAACTTCTGG
LOC_Os06g11190
Os.27029.1.S1_at--187--9371Chr06:5869305..5869329 (25 bp)
TCTGGGAACAACTCGAGGGAACTCT
LOC_Os06g11190
Os.27029.1.S1_at--876--1051Chr06:5869290..5869314 (25 bp)
AGGGAACTCTGGAGCAACGCTGTCC
LOC_Os06g11190
Os.27029.1.S1_at--1077--2591Chr06:5869275..5869299 (25 bp)
AACGCTGTCCTAGCTGTAGTTTGAA
LOC_Os06g11190
Os.27029.1.S1_at--930--5391Chr06:5869240..5869264 (25 bp)
GAAGCTTTGCATACGACTCTGGTCA
LOC_Os06g11190
Os.27029.1.S1_at--556--4911Chr06:5869199..5869223 (25 bp)
GCTTCCGTTAGCTAGAATTTCTCCC
LOC_Os06g11190
Os.27029.1.S1_at--825--191Chr06:5869183..5869207 (25 bp)
ATTTCTCCCACGTTTTCACATTGTA
LOC_Os06g11190
Target Sequence 
GTGTCACCAGTTCAGGCAACGACGATATATAAGGCCATAAAGGACAAAGGCCTTCCTGTTGCTTTGGTCGAGTATGAAGG
GGAACAACATGGTTTCCGCAAGGCCGAGAACATCAAGTTTACCTTGGAGCAGCAGATGGTGTTCTTCGCTAGATTAGTGG
GGCACTTCAAGGTGGCTGATGGCATCACTCCAATCAAGATCGACAATTTTGATGAACCCTCCTTGTAAGCGTTAAGAAGT
TATTCGTCACCTAATCAACTTCTGGGAACAACTCGAGGGAACTCTGGAGCAACGCTGTCCTAGCTGTAGTTTGAAATAAT
CTCTTGAAGCTTTGCATACGACTCTGGTCAATATAATGGAATAAATGCTTCCGTTAGCTAGAATTTCTCCCACGTTTTCA
CATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis