Browse Element(s) Details

Os.26448.1.A1_at

Description

gb:CB677305
DB_XREF= gi:29681030
DB_XREF=OSJNEe14B16.r
CLONE=OSJNEe14B16
TID=Os.26448.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26448 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:Q9SZC9 (A.thaliana) AHM6_ARATH Potential copper-transporting ATPase PAA1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g08070	11/11	copper-translocating P-type ATPase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g08010	Os.12625.1.S1_a_at	11/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.1.S1_x_at	9/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.4.S1_x_at	8/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.6.S1_x_at	7/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.2.S1_x_at	6/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.57463.1.S1_x_at	3/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08020	Os.12625.1.S1_a_at	11/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.1.S1_x_at	9/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.4.S1_x_at	8/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.6.S1_x_at	7/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.2.S1_x_at	6/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.57463.1.S1_x_at	2/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08030	OsAffx.25013.1.S1_at	11/11	3	+	4084016..4084915	expressed protein
LOC_Os03g08040	OsAffx.3170.1.S1_at	11/11	3	+	4086826..4089008	hypothetical protein
LOC_Os03g08050	Os.12625.1.S1_a_at	11/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.1.S1_x_at	6/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.4.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.2.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.6.S1_x_at	4/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.57463.1.S1_x_at	3/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_a_at	11/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_x_at	9/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.4.S1_x_at	8/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.6.S1_x_at	7/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.2.S1_x_at	5/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.57463.1.S1_x_at	3/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08070	Os.26448.1.A1_at	11/11	3	+	4099099..4106050	copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080	Os.27944.1.S1_at	10/11	3	+	4108770..4110263	YGGT family protein, expressed
LOC_Os03g08090	Os.50444.1.S1_at	11/11	3	+	4110245..4111661	hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100	Os.14134.1.S1_at	10/11	3	+	4112575..4115607	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110	Os.48498.1.S1_at	11/11	3	+	4116077..4121832	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120	OsAffx.15367.1.S1_at	1/11	3	+	4124340..4127243	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130	OsAffx.25014.1.S1_at	11/11	3	+	4127938..4129282	hypothetical protein
LOC_Os03g08140	Os.7286.1.S1_at	11/11	3	+	4129867..4136536	Tubulin-tyrosine ligase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006825	biological_process	copper ion transport
GO:0009767	biological_process	photosynthetic electron transport
GO:0009873	biological_process	ethylene mediated signaling pathway
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0009941	cellular_component	chloroplast envelope
GO:0005375	molecular_function	copper ion transporter activity
GO:0015662	molecular_function	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26448.1.A1_at--90--203	1	Chr03:4099774..4099798 (25 bp)	ACATAGTAGCTATCCCTATTGCCGC	LOC_Os03g08070
Os.26448.1.A1_at--990--477	1	Chr03:4099740..4099764 (25 bp)	GCTGCCTCAATTTGATTTCGCCATG	LOC_Os03g08070
Os.26448.1.A1_at--922--453	1	Chr03:4099567..4099591 (25 bp)	GCCCTGAGCTCGATTTTTGTTGTCA	LOC_Os03g08070
Os.26448.1.A1_at--648--711	1	Chr03:4099546..4099570 (25 bp)	GTCAGCAATTCTTTACTTCTACAAC	LOC_Os03g08070
Os.26448.1.A1_at--421--819	1	Chr03:4099487..4099511 (25 bp)	GGAAGATCTGAACTCCAGGCTGAAT	LOC_Os03g08070
Os.26448.1.A1_at--471--985	1	Chr03:4099462..4099486 (25 bp)	TAAATTTGCTCGCAGACCGCATCAA	LOC_Os03g08070
Os.26448.1.A1_at--985--19	1	Chr03:4099437..4099461 (25 bp)	ATTTGGTCCAGTTTGCATATCGCCG	LOC_Os03g08070
Os.26448.1.A1_at--316--547	1	Chr03:4099391..4099415 (25 bp)	GAACTGCTTTGAGATCGCACACATG	LOC_Os03g08070
Os.26448.1.A1_at--615--839	1	Chr03:4099337..4099361 (25 bp)	GGCGCAAGCGTCCATACGTATAGAT	LOC_Os03g08070
Os.26448.1.A1_at--166--497	1	Chr03:4099276..4099300 (25 bp)	GCATACAGCCTAAATCACCCAAGTG	LOC_Os03g08070
Os.26448.1.A1_at--452--287	1	Chr03:4099256..4099280 (25 bp)	AAGTGTTGTATTGCCACGGCCCCAA	LOC_Os03g08070

Target Sequence

ACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGA
TTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAA
ACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCC
GCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCG
CAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAG
TGTTGTATTGCCACGGCCCCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis