Browse Element(s) Details


Os.27944.1.S1_at

Description gb:AK106221.1
DB_XREF= gi:32991430
TID=Os.27944.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H08, full insert sequence.
FL= gb:AK106024.1 gb:AK071755.1 gb:AK106221.1 gb:AK060013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0808010/11YGGT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08030OsAffx.25013.1.S1_at11/113+4084016..4084915expressed protein
LOC_Os03g08040OsAffx.3170.1.S1_at11/113+4086826..4089008hypothetical protein
LOC_Os03g08050Os.12625.1.S1_a_at11/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.1.S1_x_at6/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.4.S1_x_at5/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.2.S1_x_at5/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.6.S1_x_at4/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.57463.1.S1_x_at3/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.1.S1_a_at11/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.1.S1_x_at9/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.4.S1_x_at8/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.6.S1_x_at7/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.2.S1_x_at5/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.57463.1.S1_x_at3/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08070Os.26448.1.A1_at11/113+4099099..4106050copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080Os.27944.1.S1_at10/113+4108770..4110263YGGT family protein, expressed
LOC_Os03g08090Os.50444.1.S1_at11/113+4110245..4111661hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100Os.14134.1.S1_at10/113+4112575..4115607hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27944.1.S1_at--544--7371Chr03:4109704..4109728 (25 bp)
GTGATCCGTATCTGAACATTTTCCG
LOC_Os03g08080
Os.27944.1.S1_at--866--5211Chr03:4109917..4109941 (25 bp)
GAATCCGCCCGGTAAAATCGCAGGA
LOC_Os03g08080
Os.27944.1.S1_at--1145--8851Chr03:4109958..4109982 (25 bp)
TGATGCTCTATCTAGGTGGGACTTC
LOC_Os03g08080
Os.27944.1.S1_at--862--7451Chr03:4109973..4109997 (25 bp)
GTGGGACTTCGTTTGAACCAGTTTG
LOC_Os03g08080
Os.27944.1.S1_at--971--1311Chr03:4110001..4110025 (25 bp)
AGATGGAATCGCTGTCTCACTGACA
LOC_Os03g08080
Os.27944.1.S1_at--89--3511Chr03:4110024..4110048 (25 bp)
CATGGTGGCCATCAGACTAAGAGTC
LOC_Os03g08080
Os.27944.1.S1_at--514--10811Chr03:4110127..4110151 (25 bp)
TTGTACGCTGTAGAATCCATCCCAT
LOC_Os03g08080
Os.27944.1.S1_at--973--3011Chr03:4110140..4110164 (25 bp)
AATCCATCCCATTGAGGCTTCGTGT
LOC_Os03g08080
Os.27944.1.S1_at--818--4911Chr03:4110156..4110180 (25 bp)
GCTTCGTGTTTTCTGCATGTATGCA
LOC_Os03g08080
Os.27944.1.S1_at--1160--6151Chr03:4110181..4110205 (25 bp)
GAGGAACAACCTGCTTGACTAGTTT
LOC_Os03g08080
Os.27944.1.S1_at--1003--5251Chr03:4110248..4110272 (25 bp)
GAATCGCATGCTCACTGTTTATACT
NONE
Target Sequence 
GTGATCCGTATCTGAACATTTTCCGGGGAATCATCCCGCCGCTGGGGGGAACGCTCGACCTGTCGCCCATCCTCGCGTTC
CTGGTCCTCAACGCCTTGTCCAGCACCGCCGCCGCGCTCCCGGCCGAGCTCCCGGACCCAGCACCGCCGACGTCTCGCGG
CGCAACCTCGTCAAGCTCCGTGCTCACCGCAAACCGGAGGAAATGGATGCGGAGAATCCGCCCGGTAAAATCGCAGGAAG
GAGAGGAGGAAATGTGATGCTCTATCTAGGTGGGACTTCGTTTGAACCAGTTTGGACAGATGGAATCGCTGTCTCACTGA
CATGGTGGCCATCAGACTAAGAGTCTGGGCATGTTCAGACGCGAACGATCATCAATTAAGCAGGCGGAATTGTTTTGGTT
GTGTTGCTTCAGAAGATTTTTGCTTGTACGCTGTAGAATCCATCCCATTGAGGCTTCGTGTTTTCTGCATGTATGCAGAG
GAACAACCTGCTTGACTAGTTTGACATGTTCCAGTCTTTTGGATGAGTTTGTTACTTTGTTGANGAATCGCATGCTCACT
GTTTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis