Browse Element(s) Details


OsAffx.3171.1.S1_at

Description tigr:9631.m00753
TID=OsAffx.3171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3171.1.S1_at--639--10151Chr03:4141734..4141758 (25 bp)
TATCCCCACTCTGAGTATGCTTGAT
LOC_Os03g08160
OsAffx.3171.1.S1_at--1158--6291Chr03:4141759..4141783 (25 bp)
GATGACTTTCTTTACATGATAACCA
LOC_Os03g08160
OsAffx.3171.1.S1_at--266--9491Chr03:4141864..4141888 (25 bp)
TCTGCTGCAAGGTTCTCCATTCTCA
LOC_Os03g08160
OsAffx.3171.1.S1_at--278--1011Chr03:4141873..4141897 (25 bp)
AGGTTCTCCATTCTCAGTTCAATTT
LOC_Os03g08160
OsAffx.3171.1.S1_at--1035--1211Chr03:4141888..4141912 (25 bp)
AGTTCAATTTGCCATCCCTGTGCAA
LOC_Os03g08160
OsAffx.3171.1.S1_at--413--531Chr03:4141901..4141925 (25 bp)
ATCCCTGTGCAATCTCTAAGTACCT
LOC_Os03g08160
OsAffx.3171.1.S1_at--1123--6971Chr03:4141920..4141944 (25 bp)
GTACCTCAAGATTAGCTGGATAAGT
LOC_Os03g08160
OsAffx.3171.1.S1_at--747--7951Chr03:4141937..4141961 (25 bp)
GGATAAGTGCTATTGCTGTTGGTGA
LOC_Os03g08160
OsAffx.3171.1.S1_at--282--10191Chr03:4141972..4141993 (22 bp)
TATATCTATGAAGGGCAGTATGGCC
LOC_Os03g08160
OsAffx.3171.1.S1_at--820--4791Chr03:4143989..4144013 (25 bp)
GCTCGACGACCACAGTCGGAAGGCT
LOC_Os03g08160
OsAffx.3171.1.S1_at--249--2131Chr03:4144000..4144024 (25 bp)
ACAGTCGGAAGGCTCTCCACGACGG
LOC_Os03g08160
Target Sequence 
TATCCCCACTCTGAGTATGCTTGATGATGACTTTCTTTACATGATAACCAAGATGAACGAAGAAGACAAAAATGCCTGGA
TCATCTCTGTTGACATGAAACATAACACACTGCAAGATGTGGCCCCAATTTCTGCTGCAAGGTTCTCCATTCTCAGTTCA
ATTTGCCATCCCTGTGCAATCTCTAAGTACCTCAAGATTAGCTGGATAAGTGCTATTGCTGTTGGTGATGCAAATGGGTA
TATCTATGAAGGGCAGTATGGCCCATGGAGCAGAGGGCGACGGCGGCCGGCTCGAGCCGGGACGGCTGGGCCATGGCGGG
GTGGCGGCGGCGGCGGCGCATCGCCGGGACGGCTTGGCCACAGCTGGGCGGCGGCGGCGGCGCATCGCCGGGACGGCTTG
GCCACAGCGGGGCGGGGACGGCTCGGCCACGGCGGGGCGGCGGCGGCGCTCGACGACCACAGTCGGAAGGCTCTCCACGA
CGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis