Browse Element(s) Details


Os.53600.1.S1_at

Description gb:AK073509.1
DB_XREF= gi:32983532
TID=Os.53600.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044N03, full insert sequence.
FL= gb:AK073509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0798011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07940OsAffx.12775.1.S1_at10/113+4036278..4040425AP2 domain containing protein, expressed
LOC_Os03g07950Os.54025.1.S1_at11/113+4045270..4046191expressed protein
LOC_Os03g07960Os.16997.1.S1_at9/113+4048971..4051471expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_s_at11/113+4052698..4056735expressed protein
LOC_Os03g07970Os.54386.1.S1_at11/113+4052698..4056735expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_at10/113+4052698..4056735expressed protein
LOC_Os03g07980Os.53600.1.S1_at11/113+4058448..4059167expressed protein
LOC_Os03g07990Os.11182.1.S1_at11/113+4060778..4064152GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000Os.18248.1.S1_at10/113+4069116..4073025C3HC4 zinc finger containing protein, putative, expressed
LOC_Os03g08010Os.12625.1.S1_a_at11/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.1.S1_x_at9/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.4.S1_x_at8/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.6.S1_x_at7/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.2.S1_x_at6/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.57463.1.S1_x_at3/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08020Os.12625.1.S1_a_at11/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.1.S1_x_at9/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.4.S1_x_at8/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.6.S1_x_at7/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.2.S1_x_at6/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.57463.1.S1_x_at2/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08030OsAffx.25013.1.S1_at11/113+4084016..4084915expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53600.1.S1_at--444--5351Chr03:4059132..4059156 (25 bp)
GAAGATTGGTTGAGACAGCATAAAC
LOC_Os03g07980
Os.53600.1.S1_at--932--2451Chr03:4059110..4059134 (25 bp)
AACAAGTTATATTCTGAACAGCCAA
LOC_Os03g07980
Os.53600.1.S1_at--962--2472Chr07:28744458..28744518 (25 bp)
AACAGCCAAGGCAGCATTCTCGCAT
NONE
Os.53600.1.S1_at--787--2931Chr03:4059087..4059111 (25 bp)
AAGGCAGCATTCTCGCATAGCTAGC
LOC_Os03g07980
Os.53600.1.S1_at--728--291Chr03:4059071..4059095 (25 bp)
ATAGCTAGCCTCTTCAGACTTTCAG
LOC_Os03g07980
Os.53600.1.S1_at--1009--9651Chr03:4059058..4059082 (25 bp)
TCAGACTTTCAGAGAGCGGTAGAGA
LOC_Os03g07980
Os.53600.1.S1_at--72--10031Chr03:4059039..4059063 (25 bp)
TAGAGAGGAGAGCTGCCGCCATGGG
LOC_Os03g07980
Os.53600.1.S1_at--934--10611Chr03:4058728..4058752 (25 bp)
TTCGTGCTCAAGTGTAAGGCGTCTC
LOC_Os03g07980
Os.53600.1.S1_at--1011--7431Chr03:4058717..4058741 (25 bp)
GTGTAAGGCGTCTCTCTAGAGCTAG
LOC_Os03g07980
Os.53600.1.S1_at--574--5911Chr03:4058699..4058723 (25 bp)
GAGCTAGAGCTAGCCACACCTCTGG
LOC_Os03g07980
Os.53600.1.S1_at--1042--1691Chr03:4058688..4058712 (25 bp)
AGCCACACCTCTGGGTGTGTTTGGA
LOC_Os03g07980
Target Sequence 
GAAGATTGGTTGAGACAGCATAAACAAGTTATATTCTGAACAGCCAAGGCAGCATTCTCGCATAGCTAGCCTCTTCAGAC
TTTCAGAGAGCGGTAGAGAGGAGAGCTGCCGCCATGGGGAGGCCGTCGTCGACGGAGAGGCTGGTGTGCGTCGTCCTGGC
GGTGCTCGCCGTGCTCTCGCCGCTGTACATCGACCGGCGGCGGCCGGCGGCGTGGGACAGCGACGACGACGAGGAGGGCG
GCGGCGTGTCGGCGCTGCTGCTGCCGGCGCTGCTGATCGTGCTGATCCTGGCCATCAACGTTACGTGCTTCGTGGACCGG
AGGGTGGTCAGGTTCGACCCCTACTGGATACACCGCGTCGGGGGCTCATCCTGCGGCCTCATGGCCACGCTGCTGCTGCT
CGGCTTCGTGCTCAAGTGTAAGGCGTCTCTCTAGAGCTAGAGCTAGCCACACCTCTGGGTGTGTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis