Browse Element(s) Details


Os.16997.1.S1_at

Description gb:CB617853
DB_XREF= gi:29612840
DB_XREF=OSIIEa01E18.r
CLONE=OSIIEa01E18
TID=Os.16997.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.16997 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T00967 (A.thaliana) T00967 hypothetical protein T9J22.1 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g079609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07930Os.43567.1.S1_x_at3/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.38172.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.53217.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930OsAffx.11375.1.S1_at1/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07940OsAffx.12775.1.S1_at10/113+4036278..4040425AP2 domain containing protein, expressed
LOC_Os03g07950Os.54025.1.S1_at11/113+4045270..4046191expressed protein
LOC_Os03g07960Os.16997.1.S1_at9/113+4048971..4051471expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_s_at11/113+4052698..4056735expressed protein
LOC_Os03g07970Os.54386.1.S1_at11/113+4052698..4056735expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_at10/113+4052698..4056735expressed protein
LOC_Os03g07980Os.53600.1.S1_at11/113+4058448..4059167expressed protein
LOC_Os03g07990Os.11182.1.S1_at11/113+4060778..4064152GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000Os.18248.1.S1_at10/113+4069116..4073025C3HC4 zinc finger containing protein, putative, expressed
LOC_Os03g08010Os.12625.1.S1_a_at11/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.1.S1_x_at9/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.4.S1_x_at8/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.6.S1_x_at7/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.2.S1_x_at6/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.57463.1.S1_x_at3/113+4074305..4076350Elongation factor 1-alpha, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16997.1.S1_at--283--9891Chr03:4049629..4049653 (25 bp)
TACTTGTTCAGATTATGCCCATTGC
LOC_Os03g07960
Os.16997.1.S1_at--27--611Chr03:4049615..4049639 (25 bp)
ATGCCCATTGCCATAACTGGTTCAA
LOC_Os03g07960
Os.16997.1.S1_at--108--9791Chr03:4049531..4049555 (25 bp)
TAAGCCCACTAGATATGCATTGAAT
LOC_Os03g07960
Os.16997.1.S1_at--534--651Chr03:4049485..4049509 (25 bp)
ATGCAGGTGGCGCAGTATGCTTCTA
LOC_Os03g07960
Os.16997.1.S1_at--179--631Chr03:4049469..4049493 (25 bp)
ATGCTTCTAGCAGTGGTCAAGGCAA
LOC_Os03g07960
Os.16997.1.S1_at--253--10471Chr03:4049296..4049316 (21 bp)
TTACGAGCATTGGAAGATCTTGACT
LOC_Os03g07960
Os.16997.1.S1_at--404--5511Chr03:4049249..4049273 (25 bp)
GAACAACCCATCAGCGTCTGTCGAT
LOC_Os03g07960
Os.16997.1.S1_at--1013--1091Chr03:4049206..4049230 (25 bp)
AGTGTAGCCCTTGGAGCTTTAGACA
LOC_Os03g07960
Os.16997.1.S1_at--867--71NONE
ATTGCCAATGCATACCGGACTCCTA
NONE
Os.16997.1.S1_at--857--5711Chr03:4049025..4049049 (25 bp)
GACTCCTACGGATGATTATGAAATG
LOC_Os03g07960
Os.16997.1.S1_at--307--3271Chr03:4048780..4048804 (25 bp)
CAACTACAGGATATTCTTTGATGCT
NONE
Target Sequence 
TACTTGTTCAGATTATGCCCATTGCCATAACTGGTTCAAACATCCAGAGAATGTGTATTCGATCTAATGATGTCAGATTA
TGTGTGCTTAAAACAAACTAAGCCCACTAGATATGCATTGAATTCNCCTGAAGAAGAAAACAAAATGCAGGTGGCGCAGT
ATGCTTCTAGCAGTGGTCAAGGCAAAGCTGCCTCTGATNCANGTGGACGAATGCTTACGAGCATTGGAAGATCTTGACTC
ACNTGCTACTACAAGCATCACNGGAACAACCCATCAGCGTCTGTCGATGTCNATGAGGANCAAANTCAGTGTAGCCCTTG
GAGCTTTAGACANCCTCCTTCAGACTGTGCCATCANCAGTGCTGGACAAAGGGAAGNCCATTGCCAATGCATACCGGACT
CCTACGGATGATTATGAAATGGGCGATGCAACAGAGTTGGATCCAAGATTGANACAACTACAGGATATTCTTTGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis