Browse Element(s) Details


Os.11726.2.S1_x_at

Description gb:AK103276.1
DB_XREF= gi:32988485
TID=Os.11726.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124K13, full insert sequence.
FL= gb:AK103276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0785011/11tRNA methyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07800Os.49223.1.S1_at11/113+3949327..3953619RNA recognition motif family protein, expressed
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0004808molecular_functiontRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11726.2.S1_x_at--894--8271Chr03:3976378..3976402 (25 bp)
GGCATGATAGGCACAGTCCCTGCAG
LOC_Os03g07850
Os.11726.2.S1_x_at--817--5071Chr03:3976399..3976423 (25 bp)
GCAGCCTTCTCTTGAGTCTTGACTA
LOC_Os03g07850
Os.11726.2.S1_x_at--471--9291Chr03:3976425..3976449 (25 bp)
TCCGTACATTCGTGGTTCTGCAAAG
LOC_Os03g07850
Os.11726.2.S1_x_at--465--2731Chr03:3976469..3976493 (25 bp)
AAGCAAGAATCGTGTTGTCCCCAGG
LOC_Os03g07850
Os.11726.2.S1_x_at--93--851Chr03:3976491..3976515 (25 bp)
AGGAACTCCAGCTGGTTCTTCAAAG
LOC_Os03g07850
Os.11726.2.S1_x_at--1093--8551Chr03:3976522..3976546 (25 bp)
TGGTTGGCGAGCTTGCATTTCTGAA
LOC_Os03g07850
Os.11726.2.S1_x_at--477--5311Chr03:3976652..3976676 (25 bp)
GAAGGGTCTCGGAATTCCACTCATG
LOC_Os03g07850
Os.11726.2.S1_x_at--1128--10671Chr03:3976666..3976690 (25 bp)
TTCCACTCATGAGCCAAAGCGTCTA
LOC_Os03g07850
Os.11726.2.S1_x_at--84--1291Chr03:3976698..3976722 (25 bp)
AGATCCGATCGTCAGTTAAGCATTA
LOC_Os03g07850
Os.11726.2.S1_x_at--547--4951Chr03:3976717..3976741 (25 bp)
GCATTACAGTATCCTCTTATAGCAG
LOC_Os03g07850
Os.11726.2.S1_x_at--16--991Chr03:3976748..3976772 (25 bp)
AGGAGATGCTCCTTTCATGCTACTA
LOC_Os03g07850
Target Sequence 
GGCATGATAGGCACAGTCCCTGCAGCCTTCTCTTGAGTCTTGACTACTCCGTACATTCGTGGTTCTGCAAAGTTGCACGT
TAACCCTGCAAAAGCAAGAATCGTGTTGTCCCCAGGAACTCCAGCTGGTTCTTCAAAGGAGGTATGGTTGGCGAGCTTGC
ATTTCTGAAGAGGGTTCTCTGGATAAAAGAGGCGGATGAACATCATTATCCATGCAAGAATTGACCTGGCATAAATTTTC
AGCGGTANGCTGCCGATCTGGCNGGAAATCACACGAAGGGTCTCGGAATTCCACTCATGAGCCAAAGCGTCTAGAACTCT
AGATCCGATCGTCAGTTAAGCATTACAGTATCCTCTTATAGCAGTGTATCAGGAGATGCTCCTTTCATGCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11726.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis