Browse Element(s) Details


OsAffx.12772.1.S1_at

Description tigr:9631.m00720
TID=OsAffx.12772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087243 AP2 transcription factor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0783011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07800Os.49223.1.S1_at11/113+3949327..3953619RNA recognition motif family protein, expressed
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12772.1.S1_at--599--2211Chr03:3964396..3964420 (25 bp)
ACAACGTCCACGTCATACACCAGAG
LOC_Os03g07830
OsAffx.12772.1.S1_at--976--1891Chr03:3964405..3964429 (25 bp)
ACGTCATACACCAGAGGCTGCAGGA
LOC_Os03g07830
OsAffx.12772.1.S1_at--1109--3471Chr03:3964425..3964449 (25 bp)
CAGGAGCTCAAGAACTCGTCGTCGT
LOC_Os03g07830
OsAffx.12772.1.S1_at--255--3631Chr03:3964580..3964604 (25 bp)
CTTCCAGGCGCTGGAGCAAGCGATG
LOC_Os03g07830
OsAffx.12772.1.S1_at--1129--971Chr03:3964693..3964717 (25 bp)
AGGAGTTCTTGCAGCAGATAGGCGT
LOC_Os03g07830
OsAffx.12772.1.S1_at--142--1271Chr03:3964708..3964732 (25 bp)
AGATAGGCGTGCTCAAGGCCGACGA
LOC_Os03g07830
OsAffx.12772.1.S1_at--617--4711Chr03:3964832..3964856 (25 bp)
GCTGGCTGCCGACATGAGCGACATC
LOC_Os03g07830
OsAffx.12772.1.S1_at--553--2111Chr03:3964843..3964867 (25 bp)
ACATGAGCGACATCGCAGGAGGCCA
LOC_Os03g07830
OsAffx.12772.1.S1_at--683--4171Chr03:3964883..3964907 (25 bp)
CGCCAATGGCGGGTTCCAGATGGAC
LOC_Os03g07830
OsAffx.12772.1.S1_at--151--3991Chr03:3964892..3964916 (25 bp)
CGGGTTCCAGATGGACGATCTGCAT
LOC_Os03g07830
OsAffx.12772.1.S1_at--552--4051Chr03:3964907..3964931 (25 bp)
CGATCTGCATGAGGTCGAACAGTTT
LOC_Os03g07830
Target Sequence 
ACAACGTCCACGTCATACACCAGAGGCTGCAGGAGCTCAAGAACTCGTCGTCGTCGCCGACCAAGCCGCCGCCGCGTACG
CCGACGCGCGCCAACCCGCCTCCGCCGCCTCTCCCCACCTCGTCGCCCTGCTCCACCGTCACCAACAGCGTCGGCTCCGC
GGCTCTGCCTCCGCCCATGTCGTGCTTCCAGGCGCTGGAGCAAGCGATGGCGGCCACGGCGGCGATGGAGAGCGCGCCGT
GCGACGACGACGCCGCCGTCGTGGGCTTCGGCGCCGACAAGCCCCAGCTCGACCTCAAGGAGTTCTTGCAGCAGATAGGC
GTGCTCAAGGCCGACGACGACGGCGCGACAGGCAAGAACGGCGCCGTCCACGGGGACGACGGCGAGCTGGCGGACGCGTT
TGGCTTCGGCGGCAGCGGCGAGTTCGACTGGGACGCGCTGGCTGCCGACATGAGCGACATCGCAGGAGGCCACGGCGGCG
CGCTGGGCGCCAATGGCGGGTTCCAGATGGACGATCTGCATGAGGTCGAACAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis