Browse Element(s) Details


Os.3426.2.S1_x_at

Description gb:CR280190
DB_XREF= gi:44666756
DB_XREF=CR280190
CLONE=p704a04p5
TID=Os.3426.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3426 (NCBI UniGene Cluster)
UG_TITLE=MRNA RAPB protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g078808/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed
LOC_Os03g07910Os.19194.1.S1_at11/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07910Os.29823.1.S1_at1/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3426.2.S1_x_at--843--651Chr03:3981654..3981678 (25 bp)
ATGAATCCCGGCATCAACACGCGAT
LOC_Os03g07880
Os.3426.2.S1_x_at--704--2571Chr03:3981538..3981562 (25 bp)
AACGGCGTTGTGTTCTCAAAGCACG
LOC_Os03g07880
Os.3426.2.S1_x_at--466--5951Chr03:3981514..3981538 (25 bp)
GAGCACAGCTTGTCGTCCAGTGATC
LOC_Os03g07880
Os.3426.2.S1_x_at--979--2331Chr03:3981472..3981496 (25 bp)
AAAGAGGGCGCTTGAGATCCTCGCC
LOC_Os03g07880
Os.3426.2.S1_x_at--1160--7111Chr03:3981441..3981465 (25 bp)
GTCATGGCAAATCATCCTTGGCTTA
LOC_Os03g07880
Os.3426.2.S1_x_at--541--8491Chr03:3981423..3981447 (25 bp)
TGGCTTATGTGTGGTGCCCAGCAAA
LOC_Os03g07880
Os.3426.2.S1_x_at--270--10671Chr03:3981308..3981332 (25 bp)
TTCCTCTGCCTCCTTAGTTTGGAGA
LOC_Os03g07880
Os.3426.2.S1_x_at--615--3051Chr03:3981258..3981282 (25 bp)
AATCTGATCATGCTAGACTTGTGAC
LOC_Os03g07880
Os.3426.2.S1_x_at--3--1651NONE
ACACTTAAAACCATGTTCGGCCGCG
NONE
Os.3426.2.S1_x_at--271--4411NONE
GCCACGTCGAATCCTAAAACTCCGA
NONE
Os.3426.2.S1_x_at--822--5131NONE
GCAAAGCTTAATGCATTGCTGGCCT
NONE
Target Sequence 
ATGAATCCCGGCATCAACACGCGATGAAAAGAGCTCGGGGAACAGGGGGGAGATTCCTCNACACAAAGCAGCAGCNTGAA
GCTTCAGATGGTGGNACCCCAANGCTCGTCTCTGCNAACGGCGTTGTGTTCTCAAAGCACGAGCACAGCTTGTCGTCCAG
TGATCTCCATCATCGTNNNGCGAAAGAGGGCGCTTGAGATCCTCGCCGTTNCTNGTCATGGCAAATCATCCTTGGCTTAT
GTGTGGTGCCCAGCAAAAAAAAATCTGACTNGAACCTGTGTGTAAACTGATGNGTATGGGTGGGTTTTGTGCAACTNGTN
ACTNGGGTGCTTGANATCTGTNTCTGTNNTTCCTCTGCCTCCTTAGTTTGGAGACGGTGCAGCTNCAGCTGGTACCAGTA
ATCTGATCATGCTAGACTTGTGACAAAAAAAAAAAAAAAAACCACACTTAAAACCATGTTCGGCCGCGCTCGGCGCCACG
TCGAATCCTAAAACTCCGAGCAAAGCTTAATGCATTGCTGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3426.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis