Browse Element(s) Details


OsAffx.23903.2.S1_s_at

Description tigr:9629.m06279
TID=OsAffx.23903.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0486011/11expressed protein
LOC_Os01g6349011/11hypothetical protein
LOC_Os02g537609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04820NANA2+2222760..2224908retrotransposon, putative, centromere-specific
LOC_Os02g04830NANA2+2226405..2227106retrotransposon, putative, centromere-specific
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed
LOC_Os02g04850Os.54649.1.S1_at11/112+2241066..2242600expressed protein
LOC_Os02g04860OsAffx.23903.2.S1_s_at11/112+2242947..2246169expressed protein
LOC_Os02g04860Os.13783.1.S1_at11/112+2242947..2246169expressed protein
LOC_Os02g04870Os.19194.1.S1_at1/112+2248194..2249253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04880OsAffx.24101.1.S1_at8/112+2253514..2256950hypothetical protein
LOC_Os02g04880Os.56006.1.S1_at1/112+2253514..2256950hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_x_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_s_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.1.S1_x_at5/112+2263602..2264879hypothetical protein
LOC_Os02g04910Os.14919.1.S1_at5/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910Os.56216.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910OsAffx.29313.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23903.2.S1_s_at--235--8913Chr02:32927243..32927267 (25 bp)
TGAGACAGAAGTCGATTCTATGGAC
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--876--5633Chr02:32927240..32927264 (25 bp)
GACAGAAGTCGATTCTATGGACGTT
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--575--3413Chr02:32927238..32927262 (25 bp)
CAGAAGTCGATTCTATGGACGTTGA
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--59--5333Chr02:32927236..32927260 (25 bp)
GAAGTCGATTCTATGGACGTTGAGG
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--629--1153Chr02:32927234..32927258 (25 bp)
AGTCGATTCTATGGACGTTGAGGAA
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--127--7213Chr02:32927233..32927257 (25 bp)
GTCGATTCTATGGACGTTGAGGAAT
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--940--113Chr02:2243407..2243431 (25 bp)
ATTCTATGGACGTTGAGGAATCTCC
LOC_Os02g04860
OsAffx.23903.2.S1_s_at--527--1093Chr02:32927156..32927180 (25 bp)
AGTGGCAACAACACTGCATGACCCC
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--504--8513Chr02:32927154..32927178 (25 bp)
TGGCAACAACACTGCATGACCCCAT
LOC_Os02g53760
OsAffx.23903.2.S1_s_at--577--2472Chr02:2243332..2243356 (25 bp)
AACACTGCATGACCCCATCGTCGCT
LOC_Os02g04860
OsAffx.23903.2.S1_s_at--318--512Chr02:2243316..2243340 (25 bp)
ATCGTCGCTACCAAACCCTTCAGCA
LOC_Os02g04860
Target Sequence 
TGAGACAGAAGTCGATTCTATGGACGTTGAGGAATCTCCTGAAGCAAATGCCGCAGCAATCGATGGTGAAAGCCTTCACC
AGTGGGCAGTGGCAACAACACTGCATGACCCCATCGTCGCTACCAAACCCTTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23903.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis