Browse Element(s) Details


OsAffx.11894.1.S1_x_at

Description tigr:9630.m00404
TID=OsAffx.11894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0489010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed
LOC_Os02g04850Os.54649.1.S1_at11/112+2241066..2242600expressed protein
LOC_Os02g04860OsAffx.23903.2.S1_s_at11/112+2242947..2246169expressed protein
LOC_Os02g04860Os.13783.1.S1_at11/112+2242947..2246169expressed protein
LOC_Os02g04870Os.19194.1.S1_at1/112+2248194..2249253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04880OsAffx.24101.1.S1_at8/112+2253514..2256950hypothetical protein
LOC_Os02g04880Os.56006.1.S1_at1/112+2253514..2256950hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_x_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_s_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.1.S1_x_at5/112+2263602..2264879hypothetical protein
LOC_Os02g04910Os.14919.1.S1_at5/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910Os.56216.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910OsAffx.29313.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04924Os.10026.1.S1_at11/112+2277042..2279839retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11894.1.S1_x_at--503--9351Chr02:2259455..2259479 (25 bp)
TCGCATCAATGCCAGTGCTCGTTTC
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--1101--9391Chr02:2259473..2259840 (25 bp)
TCGTTTCTTGAGGTCTCCTACATCA
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--429--10311Chr02:2259476..2259843 (25 bp)
TTTCTTGAGGTCTCCTACATCACTG
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--248--10771NONE
TTGAGGTCTCCTACATCACTGCTCA
NONE
OsAffx.11894.1.S1_x_at--472--6151Chr02:2259826..2259849 (24 bp)
GAGGTCTCCTACATCACTGCTCACT
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--1112--8891Chr02:2259890..2259914 (25 bp)
TGAGTTGAATCATCTCGCTGCACTT
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--847--7491Chr02:2259916..2259940 (25 bp)
GTGGTGATGATGCTATCAGATGCTA
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--896--6291Chr02:2259921..2259945 (25 bp)
GATGATGCTATCAGATGCTATCTCC
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--2--6351Chr02:2259924..2259948 (25 bp)
GATGCTATCAGATGCTATCTCCATA
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--1064--9071Chr02:2259926..2259950 (25 bp)
TGCTATCAGATGCTATCTCCATATT
LOC_Os02g04890
OsAffx.11894.1.S1_x_at--768--3691Chr02:2259928..2259952 (25 bp)
CTATCAGATGCTATCTCCATATTTT
LOC_Os02g04890
Target Sequence 
TCGCATCAATGCCAGTGCTCGTTTCTTGAGGTCTCCTACATCACTGCTCACTCCTATGCATCCTATGCGGCTGTTGCTAC
TGTCTGCCAAGATGAGTTGAATCATCTCGCTGCACTTGGTGGTGATGATGCTATCAGATGCTATCTCCATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11894.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis