Browse Element(s) Details


Os.10026.1.S1_at

Description gb:AK069573.1
DB_XREF= gi:32979597
TID=Os.10026.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022E20, full insert sequence.
FL= gb:AK069573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0492411/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04880OsAffx.24101.1.S1_at8/112+2253514..2256950hypothetical protein
LOC_Os02g04880Os.56006.1.S1_at1/112+2253514..2256950hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_x_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_s_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.1.S1_x_at5/112+2263602..2264879hypothetical protein
LOC_Os02g04910Os.14919.1.S1_at5/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910Os.56216.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910OsAffx.29313.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04924Os.10026.1.S1_at11/112+2277042..2279839retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g04940Os.45173.1.S1_x_at4/112+2295764..2302799retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g04940OsAffx.20877.1.S1_at1/112+2295764..2302799retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10026.1.S1_at--413--3051Chr02:2279094..2279118 (25 bp)
AATCGGTACATGGTCTCAGGCGCCA
LOC_Os02g04924
Os.10026.1.S1_at--673--2091Chr02:2279125..2279149 (25 bp)
ACATCACCGGTGAACTGGACAAGCT
LOC_Os02g04924
Os.10026.1.S1_at--827--5611Chr02:2279142..2279166 (25 bp)
GACAAGCTCACGGTTAGCGACAAGT
LOC_Os02g04924
Os.10026.1.S1_at--855--8111Chr02:2279409..2279433 (25 bp)
GGACGGCGATACAAGGGACTCTACC
LOC_Os02g04924
Os.10026.1.S1_at--784--4091Chr02:2279458..2279482 (25 bp)
CCTCTCCAAAGGCTGTTTACGGTGT
LOC_Os02g04924
Os.10026.1.S1_at--17--7751Chr02:2279478..2279502 (25 bp)
GGTGTGGCGCCATCTTTTGCAAGAT
LOC_Os02g04924
Os.10026.1.S1_at--294--8471Chr02:2279502..2279526 (25 bp)
TGGCATAGTCGGCTAGGTCATCCTT
LOC_Os02g04924
Os.10026.1.S1_at--13--7831Chr02:2279517..2279541 (25 bp)
GGTCATCCTTCAAGTCCTATAGCGT
LOC_Os02g04924
Os.10026.1.S1_at--785--8171Chr02:2279675..2279699 (25 bp)
GGAACTCATTTCCTCAGATGTCTAC
LOC_Os02g04924
Os.10026.1.S1_at--1027--1291Chr02:2279690..2279714 (25 bp)
AGATGTCTACGGACCTGCTCCTATT
LOC_Os02g04924
Os.10026.1.S1_at--785--7811Chr02:2279809..2279833 (25 bp)
GGTCTTCCATGAATTCCAAGCTCTT
LOC_Os02g04924
Target Sequence 
AATCGGTACATGGTCTCAGGCGCCACGGACCACATCACCGGTGAACTGGACAAGCTCACGGTTAGCGACAAGTACAAGGC
GAACGATCAAGTGCACACTGCCAATGGAGCAGGNNNNNNCTACGAGGGCAACAATGCTTGAGGGACGGCGATACAAGGGA
CTCTACCCGCTTCCTCCTTCATCTCCTGCATCCTCTCCAAAGGCTGTTTACGGTGTGGCGCCATCTTTTGCAAGATGGCA
TAGTCGGCTAGGTCATCCTTCAAGTCCTATAGCGTCTNAAGTTATTAGCACAAATAATCTACCTTGTCATGACAAGGCTA
GTAAAGAGTCTGTGTGTGATGTGTGTCAGATGGCCAAGAGTCATCAACTTCCTTACAATAGATCTACTAGTGTTTCTCAA
TTTCCTTTGGAACTCATTTCCTCAGATGTCTACGGACCTGCTCCTATTTCTGTTGGTAGACATAAATATTATGTGAGTTT
TGTGGATGATTATAGTAAGTTTACCTGGGTTTACCTTCTTAAAGCAAAATCAGATTTTTTCAGGTCTTCCATGAATTCCA
AGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis