Browse Element(s) Details


OsAffx.24856.1.S1_at

Description tigr:9630.m05325
TID=OsAffx.24856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5380011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53760OsAffx.23903.2.S1_s_at9/112+32927057..32927922expressed protein
LOC_Os02g53760Os.13783.1.S1_at2/112+32927057..32927922expressed protein
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24856.1.S1_at--254--9191Chr02:32950016..32950040 (25 bp)
TGCCGGCGCTGGTGCCTGCCAACTG
LOC_Os02g53800
OsAffx.24856.1.S1_at--224--4731Chr02:32950009..32950033 (25 bp)
GCTGGTGCCTGCCAACTGCTACCTG
LOC_Os02g53800
OsAffx.24856.1.S1_at--925--9011Chr02:32949990..32950010 (21 bp)
TGCAACCTGCTACTCCAGCTGTGCT
LOC_Os02g53800
OsAffx.24856.1.S1_at--391--9091Chr02:32949689..32950003 (25 bp)
TGCTACTCCAGCTGTGCTTGTCATT
LOC_Os02g53800
OsAffx.24856.1.S1_at--436--9911Chr02:32949686..32950000 (25 bp)
TACTCCAGCTGTGCTTGTCATTGTT
LOC_Os02g53800
OsAffx.24856.1.S1_at--940--4351Chr02:32949682..32949996 (25 bp)
CCAGCTGTGCTTGTCATTGTTTGTT
LOC_Os02g53800
OsAffx.24856.1.S1_at--1048--1611Chr02:32949680..32949700 (21 bp)
AGCTGTGCTTGTCATTGTTTGTTCA
LOC_Os02g53800
OsAffx.24856.1.S1_at--753--4931Chr02:32949674..32949698 (25 bp)
GCTTGTCATTGTTTGTTCACTTGCT
LOC_Os02g53800
OsAffx.24856.1.S1_at--510--51Chr02:32949667..32949691 (25 bp)
ATTGTTTGTTCACTTGCTCTCTTCC
LOC_Os02g53800
OsAffx.24856.1.S1_at--938--7691Chr02:32949633..32949657 (25 bp)
GGGTAACCATCAATCAAGCTTGCAG
LOC_Os02g53800
OsAffx.24856.1.S1_at--858--2631Chr02:32949629..32949653 (25 bp)
AACCATCAATCAAGCTTGCAGGTTC
LOC_Os02g53800
Target Sequence 
TGCCGGCGCTGGTGCCTGCCAACTGCTACCTGCAACCTGCTACTCCAGCTGTGCTTGTCATTGTTTGTTCACTTGCTCTC
TTCCCTCTGCATGGGGTAACCATCAATCAAGCTTGCAGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis