Browse Element(s) Details


Os.22676.1.S1_at

Description gb:AK066978.1
DB_XREF= gi:32976996
TID=Os.22676.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090P22, full insert sequence.
FL= gb:AK066978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5375011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53730OsAffx.24855.1.S1_at10/112+32884932..32886035hypothetical protein
LOC_Os02g53740Os.22677.1.S1_a_at6/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53740Os.22677.3.S1_x_at2/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53750Os.22676.1.S1_at11/112+32909509..32912645serine/threonine-protein kinase NAK, putative, expressed
LOC_Os02g53760OsAffx.23903.2.S1_s_at9/112+32927057..32927922expressed protein
LOC_Os02g53760Os.13783.1.S1_at2/112+32927057..32927922expressed protein
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22676.1.S1_at--567--7571Chr02:32909837..32909861 (25 bp)
GGGCGGCTAGCTCAAGATTTCAACG
LOC_Os02g53750
Os.22676.1.S1_at--428--10331Chr02:32909820..32909844 (25 bp)
TTTCAACGGTGGATGCAAAGTGCGA
LOC_Os02g53750
Os.22676.1.S1_at--502--9011Chr02:32909782..32909806 (25 bp)
TGAATTTGCCTGTTACTGCGTGTGT
LOC_Os02g53750
Os.22676.1.S1_at--350--7471Chr02:32909751..32909775 (25 bp)
GTGTGAGCGTGTATTGTTCGAGATC
LOC_Os02g53750
Os.22676.1.S1_at--510--6711Chr02:32909736..32909760 (25 bp)
GTTCGAGATCGTTTCAAGTGTACAT
LOC_Os02g53750
Os.22676.1.S1_at--369--7491Chr02:32909707..32909731 (25 bp)
GTGGTAACATATTTCTACGGTGGAT
LOC_Os02g53750
Os.22676.1.S1_at--326--10271Chr02:32909696..32909720 (25 bp)
TTTCTACGGTGGATGCAAAGTGCAG
LOC_Os02g53750
Os.22676.1.S1_at--968--3471Chr02:32909674..32909698 (25 bp)
CAGGAGGTGCAGTAACATGTTCGTT
LOC_Os02g53750
Os.22676.1.S1_at--992--7752Chr10:9586658..9586682 (25 bp)
GGTGATGCTATTTTCGATCCCAAGA
NONE
Os.22676.1.S1_at--54--10651Chr02:32909558..32909582 (25 bp)
TTCCCTTTGTTTTCAGCTTGTACCG
LOC_Os02g53750
Os.22676.1.S1_at--358--4931Chr02:32909543..32909567 (25 bp)
GCTTGTACCGCTGAATCCCGGAAAA
LOC_Os02g53750
Target Sequence 
GGGCGGCTAGCTCAAGATTTCAACGGTGGATGCAAAGTGCGACCGCGGCAGGGCGTGAATTTGCCTGTTACTGCGTGTGT
GNGCGCGTGTGAGCGTGTATTGTTCGAGATCGTTTCAAGTGTACATAATAGTGGTAACATATTTCTACGGTGGATGCAAA
GTGCAGGAGGTGCAGTAACATGTTCGTTGATTCNTTTTCTTGGTGATGCTATTTTCGATCCCAAGAGCANNNAAATGTAA
TATTGCCTTTTGTTTTCTTGAGGAAAATGGTGTTCTTTTTTTCCCTTTGTTTTCAGCTTGTACCGCTGAATCCCGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis