Browse Element(s) Details


OsAffx.24855.1.S1_at

Description tigr:9630.m05316
TID=OsAffx.24855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5373010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53710OsAffx.12628.1.S1_at11/112+32867520..32868028hypothetical protein
LOC_Os02g53720Os.12689.1.S1_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.3058.1.S1_x_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.23091.2.S1_x_at1/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53730OsAffx.24855.1.S1_at10/112+32884932..32886035hypothetical protein
LOC_Os02g53740Os.22677.1.S1_a_at6/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53740Os.22677.3.S1_x_at2/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53750Os.22676.1.S1_at11/112+32909509..32912645serine/threonine-protein kinase NAK, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24855.1.S1_at--1122--10611Chr02:32884978..32885002 (25 bp)
TTCCCGTCCGGTTTAGTACATGCTG
LOC_Os02g53730
OsAffx.24855.1.S1_at--490--3951Chr02:32884986..32885010 (25 bp)
CGGTTTAGTACATGCTGCCGCGGCC
LOC_Os02g53730
OsAffx.24855.1.S1_at--1115--3771Chr02:32885061..32885085 (25 bp)
CTCGGATGGGATGCGGCTTTTGACA
LOC_Os02g53730
OsAffx.24855.1.S1_at--1076--8951Chr02:32885081..32885105 (25 bp)
TGACAGGGCCCGTGGCCCTTCTTCT
LOC_Os02g53730
OsAffx.24855.1.S1_at--447--9472Chr02:32885119..32885143 (25 bp)
TCTCCTGGGCCGGAAGAAGGCCCAT
LOC_Os02g53730
OsAffx.24855.1.S1_at--532--1471Chr02:32885133..32885157 (25 bp)
AGAAGGCCCATCACAGGACATCAGT
LOC_Os02g53730
OsAffx.24855.1.S1_at--750--2091Chr02:32885150..32885174 (25 bp)
ACATCAGTGTGCCTCTGCTGGTTGG
LOC_Os02g53730
OsAffx.24855.1.S1_at--338--3911Chr02:32885167..32885191 (25 bp)
CTGGTTGGGCTGATGCGGAACTTTT
LOC_Os02g53730
OsAffx.24855.1.S1_at--832--8471Chr02:32885180..32885204 (25 bp)
TGCGGAACTTTTGTTGGGCCAGGAC
LOC_Os02g53730
OsAffx.24855.1.S1_at--678--10251Chr02:32885189..32885213 (25 bp)
TTTGTTGGGCCAGGACCGCAGGACA
LOC_Os02g53730
OsAffx.24855.1.S1_at--1141--951NONE
AGGACCGCAGGACACCGGCCATCAT
NONE
Target Sequence 
TTCCCGTCCGGTTTAGTACATGCTGCCGCGGCCGCGACCGCGACGCAACACGCCCTGCGGTGCGGGGTCGGCGCCGCGAC
GCGCTCGGATGGGATGCGGCTTTTGACAGGGCCCGTGGCCCTTCTTCTTCGTCCGTCCCCTTCTCCTGGGCCGGAAGAAG
GCCCATCACAGGACATCAGTGTGCCTCTGCTGGTTGGGCTGATGCGGAACTTTTGTTGGGCCAGGACCGCAGGACACCGG
CCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis