Browse Element(s) Details


OsAffx.3058.1.S1_x_at

Description tigr:9630.m05315
TID=OsAffx.3058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5372011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53710OsAffx.12628.1.S1_at11/112+32867520..32868028hypothetical protein
LOC_Os02g53720Os.12689.1.S1_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.3058.1.S1_x_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.23091.2.S1_x_at1/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53730OsAffx.24855.1.S1_at10/112+32884932..32886035hypothetical protein
LOC_Os02g53740Os.22677.1.S1_a_at6/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53740Os.22677.3.S1_x_at2/112+32890574..32907894myosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3058.1.S1_x_at--659--431Chr02:32882381..32882405 (25 bp)
ATCTTGCCGACTTTGGTATTGCCAA
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--10--9211Chr02:32882400..32882424 (25 bp)
TGCCAAGAGCTTGTGCACCTCAAAG
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--999--51Chr02:32882464..32882488 (25 bp)
ATTGACCCTGAGTACGCATGCACAT
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--298--2151Chr02:32882516..32882540 (25 bp)
ACAGCTATGGCATTGTCCTCCTGGA
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--1052--1391Chr02:32883207..32883231 (25 bp)
AGACATCGCCGATACGTGCAAAGAT
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--1161--2731Chr02:32883244..32883268 (25 bp)
AAGAAGGTGTTCCAGTTGGCGCTCC
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--729--2791Chr02:32883277..32883301 (25 bp)
AAGAGGCAGCCTTCTGATCGACCGA
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--205--1931Chr02:32883394..32883418 (25 bp)
ACGGTTCCGAGCTATGTCAACGAGT
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--278--1511Chr02:32883439..32883463 (25 bp)
AGCACGCTCTCCTGTGAAAATTCGT
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--715--2451Chr02:32883455..32883479 (25 bp)
AAAATTCGTCGAGCGCGTCAGATGC
LOC_Os02g53720
OsAffx.3058.1.S1_x_at--404--1291Chr02:32883474..32883498 (25 bp)
AGATGCGGAGCTCTTCCTGAAGTTC
LOC_Os02g53720
Target Sequence 
ATCTTGCCGACTTTGGTATTGCCAAGAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGC
TACATTGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGGCATTGTCCTCCTGGA
GCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCATCACTTGATCCTATCCAAAGCCGCAGACAACACGG
TCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTC
CTTTGCAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGA
CCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTCCACGGTTCCGAGCTATGTCAACGAGTACGTGAGCC
TACGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3058.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis