Browse Element(s) Details


OsAffx.12628.1.S1_at

Description tigr:9630.m05314
TID=OsAffx.12628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5371011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53710OsAffx.12628.1.S1_at11/112+32867520..32868028hypothetical protein
LOC_Os02g53720Os.12689.1.S1_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.3058.1.S1_x_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.23091.2.S1_x_at1/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53730OsAffx.24855.1.S1_at10/112+32884932..32886035hypothetical protein
LOC_Os02g53740Os.22677.1.S1_a_at6/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53740Os.22677.3.S1_x_at2/112+32890574..32907894myosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12628.1.S1_at--880--9211Chr02:32867974..32867998 (25 bp)
TCCACCAATGCATTCCGAGATTTTT
LOC_Os02g53710
OsAffx.12628.1.S1_at--1161--631Chr02:32867967..32867991 (25 bp)
ATGCATTCCGAGATTTTTCGCCGAA
LOC_Os02g53710
OsAffx.12628.1.S1_at--582--10391Chr02:32867953..32867977 (25 bp)
TTTTCGCCGAACAATTTCCAGACCA
LOC_Os02g53710
OsAffx.12628.1.S1_at--561--10291Chr02:32867939..32867963 (25 bp)
TTTCCAGACCAAAATGCAACAAATG
LOC_Os02g53710
OsAffx.12628.1.S1_at--408--2191Chr02:32867921..32867945 (25 bp)
ACAAATGGACTTTCGCAATGACCCG
LOC_Os02g53710
OsAffx.12628.1.S1_at--27--851Chr02:32867917..32867941 (25 bp)
ATGGACTTTCGCAATGACCCGATCT
LOC_Os02g53710
OsAffx.12628.1.S1_at--860--8931Chr02:32867903..32867927 (25 bp)
TGACCCGATCTCAAGACTCTACGAA
LOC_Os02g53710
OsAffx.12628.1.S1_at--429--431Chr02:32867896..32867920 (25 bp)
ATCTCAAGACTCTACGAAAGTTCAG
LOC_Os02g53710
OsAffx.12628.1.S1_at--380--5571Chr02:32867683..32867905 (25 bp)
GAAAGTTCAGAGCTGAATGCTGCAT
LOC_Os02g53710
OsAffx.12628.1.S1_at--318--5271Chr02:32867669..32867693 (25 bp)
GAATGCTGCATTGGAAACCATGGTT
LOC_Os02g53710
OsAffx.12628.1.S1_at--734--3491Chr02:32867622..32867646 (25 bp)
CATGGGTTCAGGTGCGTTTAGTTCA
LOC_Os02g53710
Target Sequence 
TCCACCAATGCATTCCGAGATTTTTCGCCGAACAATTTCCAGACCAAAATGCAACAAATGGACTTTCGCAATGACCCGAT
CTCAAGACTCTACGAAAGTTCAGAGCTGAATGCTGCATTGGAAACCATGGTTAAAGCTGAAAGGGGTGGCATGGCATGGG
TTCAGGTGCGTTTAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis