Browse Element(s) Details


Os.8942.2.S1_at

Description gb:AK067308.1
DB_XREF= gi:32977326
TID=Os.8942.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100G23, full insert sequence.
FL= gb:AK067308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5370010/11DENN domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53680Os.1811.1.S1_at11/112+32826963..32830612replication factor-a protein 1 containing protein, expressed
LOC_Os02g53690Os.2347.1.S1_a_at11/112+32834495..32836587expressed protein
LOC_Os02g53690OsAffx.27547.1.S1_x_at1/112+32834495..32836587expressed protein
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53710OsAffx.12628.1.S1_at11/112+32867520..32868028hypothetical protein
LOC_Os02g53720Os.12689.1.S1_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.3058.1.S1_x_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.23091.2.S1_x_at1/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53730OsAffx.24855.1.S1_at10/112+32884932..32886035hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0009825biological_processmultidimensional cell growth
GO:0010235biological_processguard mother cell cytokinesis
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8942.2.S1_at--285--6311Chr02:32853491..32853515 (25 bp)
GATGAGCTGCCTTTTTATTACATTG
LOC_Os02g53700
Os.8942.2.S1_at--1147--8251Chr02:32853467..32853491 (25 bp)
GGCAGCTCAACGTTGGGTTACCAAA
LOC_Os02g53700
Os.8942.2.S1_at--958--7711Chr02:32853436..32853460 (25 bp)
GGGTGTTCATATGTGGTTCCAAAGA
LOC_Os02g53700
Os.8942.2.S1_at--173--2791Chr02:32853392..32853416 (25 bp)
AAGAGTCCAGTTCATGGCTATGTTA
LOC_Os02g53700
Os.8942.2.S1_at--1162--711Chr02:32853373..32853397 (25 bp)
ATGTTAAGGTACTGGCACGGCTCCC
LOC_Os02g53700
Os.8942.2.S1_at--927--5551Chr02:32853321..32853345 (25 bp)
GAAACCACCGATGACTGTTGGAGAA
LOC_Os02g53700
Os.8942.2.S1_at--926--3851Chr02:32853219..32853243 (25 bp)
CTGTTGCACACAGCTTGCCATTTAA
LOC_Os02g53700
Os.8942.2.S1_at--776--6891Chr02:32853188..32853212 (25 bp)
GTAGGTAGTAGTTGTCCCATAGGAA
LOC_Os02g53700
Os.8942.2.S1_at--762--1031Chr02:32853155..32853179 (25 bp)
AGGTCTCTCCCTTCAACAGTGACTA
LOC_Os02g53700
Os.8942.2.S1_at--687--9551Chr02:32853010..32853034 (25 bp)
TCTTTGAACCTCGATCTGTTGAGTG
LOC_Os02g53700
Os.8942.2.S1_at--906--211Chr02:32852915..32852939 (25 bp)
ATATTGTTATGCTGGACGCTCATGC
NONE
Target Sequence 
GATGAGCTGCCTTTTTATTACATTGGCAGCTCAACGTTGGGTTACCAAACTGTATGGGTGTTCATATGTGGTTCCAAAGA
AACCATACTGAACCAGACAAAGAGTCCAGTTCATGGCTATGTTAAGGTACTGGCACGGCTCCCATAAAAATGAATACGGC
TGGTTTGGACGAAACCACCGATGACTGTTGGAGAAATGGTATATTATTGAGATCCAGATATGGATAATTAGCCAAAATGA
TGTTCTAGTAGTTATACATTAATTTGGCATGGCTGTTGCACACAGCTTGCCATTTAAGATTTTGTAGGTAGTAGTTGTCC
CATAGGAAAACCTNCCAGGTCTCTCCCTTCAACAGTGACTACTAAATATGTTAATTCTGCGTTGCAAAATGTCTGTAATC
TGAAGTGTTCATTTTGCAGCTGTAATGTAATCTGTATATGAGGGGGAAACAAAAATACGTACTGTTATTTGAAGATCGGG
TTCTTTGAACCTCGATCTGTTGAGTGATGGCANAGTGTAGAGAAGAGTTCGGNATGTCCAGTAGCTTTGGAATCTTGACA
TGAATCTTGACGGAGGATATTGTTATGCTGGACGCTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8942.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis