Browse Element(s) Details


Os.2347.1.S1_a_at

Description gb:AF201895.1
DB_XREF= gi:6573148
GEN=GRF1
TID=Os.2347.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2347 (NCBI UniGene Cluster)
DEF=Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds.
PROD=growth-regulating factor 1
FL= gb:AF201895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5369011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53650OsAffx.22848.4.S1_at2/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.4.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.3.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53660OsAffx.12627.1.S1_at11/112+32816969..32817880expressed protein
LOC_Os02g53670Os.14008.1.S1_at11/112+32821977..32826900Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g53680Os.1811.1.S1_at11/112+32826963..32830612replication factor-a protein 1 containing protein, expressed
LOC_Os02g53690Os.2347.1.S1_a_at11/112+32834495..32836587expressed protein
LOC_Os02g53690OsAffx.27547.1.S1_x_at1/112+32834495..32836587expressed protein
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2347.1.S1_a_at--190--2271Chr02:32834928..32834952 (25 bp)
AAATCAACAGCTTCTTTCACGGCGT
LOC_Os02g53690
Os.2347.1.S1_a_at--53--9391Chr02:32834873..32834897 (25 bp)
TCGATCGATCATTGCATCTCCAAAC
LOC_Os02g53690
Os.2347.1.S1_a_at--280--9751Chr02:32834848..32834872 (25 bp)
TAATCACGCTTCGATCTTTCAGGAC
LOC_Os02g53690
Os.2347.1.S1_a_at--143--5551Chr02:32834806..32834830 (25 bp)
GAAACCTCCTACGAGTTCTCTGATG
LOC_Os02g53690
Os.2347.1.S1_a_at--445--4371Chr02:32834764..32834788 (25 bp)
CCACTTCTTTTCGTTGAGCTTTTTG
LOC_Os02g53690
Os.2347.1.S1_a_at--910--6651Chr02:32834735..32834759 (25 bp)
GTTGCTTCGAGTGTTACTCCTACAT
LOC_Os02g53690
Os.2347.1.S1_a_at--316--6791Chr02:32834663..32834687 (25 bp)
GTTAGACTCTTCCTGAACCAACTAG
LOC_Os02g53690
Os.2347.1.S1_a_at--435--5231Chr02:32834638..32834662 (25 bp)
GAATAGATTTTCTGCCTGGTTCCTG
LOC_Os02g53690
Os.2347.1.S1_a_at--717--7891Chr02:32834621..32834645 (25 bp)
GGTTCCTGTCAGTCCTTGTAATATC
LOC_Os02g53690
Os.2347.1.S1_a_at--571--1631Chr02:32834577..32834601 (25 bp)
AGCGTGTTCGCTTTTGTGAACGCCC
LOC_Os02g53690
Os.2347.1.S1_a_at--716--9291Chr02:32834541..32834565 (25 bp)
TCCGATTCCTCTGCCTGTGATAGTA
LOC_Os02g53690
Target Sequence 
AAATCAACAGCTTCTTTCACGGCGTGCGAGCTGCATGCTCATGCTCCAGGATCGATCGATCGATCATTGCATCTCCAAAC
TAATCACGCTTCGATCTTTCAGGACTTCATCAATGACAGGCCGAAACCTCCTACGAGTTCTCTGATGATATTCTTATTTT
TTTTCCCACTTCTTTTCGTTGAGCTTTTTGTAATGTTGCTTCGAGTGTTACTCCTACATTTTCTCCGAAATGGCCTCAGA
ATGATGCGGTCGGGCTGATTAATTAGGTTAGACTCTTCCTGAACCAACTAGGAATAGATTTTCTGCCTGGTTCCTGTCAG
TCCTTGTAATATCTGCAGCAGCTTGTGAGCCAAGCGTGTTCGCTTTTGTGAACGCCCTTTTTCTTCTTTCCGATTCCTCT
GCCTGTGATAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2347.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis