Browse Element(s) Details


OsAffx.27547.1.S1_x_at

Description tigr:9634.m01004
TID=OsAffx.27547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=growth-regulating factor 1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g103109/11growth-regulating factor 1, putative
LOC_Os02g536901/11expressed protein
LOC_Os04g241901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10280NANA6+5278097..5284927CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os06g10290OsAffx.15351.1.S1_at11/116+5287462..5292461F-box domain containing protein
LOC_Os06g10300OsAffx.4787.1.S1_at11/116+5294023..5296674F-box domain containing protein, expressed
LOC_Os06g10310OsAffx.27547.1.S1_x_at9/116+5299278..5300570growth-regulating factor 1, putative
LOC_Os06g10320NANA6+5304529..5305732hypothetical protein
LOC_Os06g10330NANA6+5306467..5306748Transcription repressor MYB4, putative
LOC_Os06g10340OsAffx.4788.1.S1_s_at11/116+5307708..5309841Autophagy protein Apg12 containing protein, expressed
LOC_Os06g10350Os.3386.1.S1_x_at11/116+5314179..5315848Myb protein, putative, expressed
LOC_Os06g10360NANA6+5322131..5325222transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27547.1.S1_x_at--64--1192Chr06:5299607..5299631 (25 bp)
AGTACTGCGAGAAGCACATGCACCG
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--951--3811Chr06:5299611..5299635 (25 bp)
CTGCGAGAAGCACATGCACCGCGGC
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--1001--4191Chr06:5299629..5299653 (25 bp)
CCGCGGCAAGAACCGTTCAAGAAAG
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--665--9391Chr06:5299894..5299918 (25 bp)
TCGTTGTCCAAGGAGCACTGCCTCA
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--338--1771Chr06:5299940..5299964 (25 bp)
ACCTGAGCCTCGACAAGCCGGCGGA
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--65--4271Chr06:5299941..5299965 (25 bp)
CCTGAGCCTCGACAAGCCGGCGGAT
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--67--8931Chr06:5299943..5299967 (25 bp)
TGAGCCTCGACAAGCCGGCGGATCA
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--406--2211Chr06:5299952..5299976 (25 bp)
ACAAGCCGGCGGATCACCACCACGA
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--1106--8632Chr06:5300056..5300080 (25 bp)
TGGGACGGCACGCAGCTCTCCATCT
LOC_Os06g10310
OsAffx.27547.1.S1_x_at--973--4851NONE
GCTACCACAGCAACGCTCTAGTCTA
NONE
OsAffx.27547.1.S1_x_at--524--1711NONE
ACCACAGCAACGCTCTAGTCTACAT
NONE
Target Sequence 
AGTACTGCGAGAAGCACATGCACCGCGGCAAGAACCGTTCAAGAAAGCCTGTGGAAATGCCGCCCCCCGCCGCCGCCGCC
GTCTACCGCCCGTCCGCGCTCTCCATCTCGCCGCCGCCGCACGACGCCGACGCGCCCAGCTACGGCGCCGGCGCCGGCGC
TCCTCTCCAGCTCCACCTCGACTCCTTCCACGCCTCGACGTCGCCGCCGCCGTCCTACCACAGGTACGCGCACACCAGCA
GCGCGCCGCTCTTCCCGTCGTCCGCCGCCGGCTACGGCGGCGGCTGGTCGTTGTCCAAGGAGCACTGCCTCACCCTCGGC
GGCGCCGCCGCCGACCTGAGCCTCGACAAGCCGGCGGATCACCACCACGACGCCACGTCGGCGACGACGGAGAAGCCCCT
GCGGCGATTCTTCGACGAGTGGCCGCGCAGCGACGACGGGAGGACGCCGTGGGACGGCACGCAGCTCTCCATCTCCATCC
CCACCGCCGCCGCCGCGTCCCCCGACCTCGCCATCGCCGGCGCCGCCTCGCGCTACCACAGCAACGCTCTAGTCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27547.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis