Browse Element(s) Details


OsAffx.4787.1.S1_at

Description tigr:9634.m01003
TID=OsAffx.4787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1030011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10269NANA6+5270723..5271311NA
LOC_Os06g10280NANA6+5278097..5284927CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os06g10290OsAffx.15351.1.S1_at11/116+5287462..5292461F-box domain containing protein
LOC_Os06g10300OsAffx.4787.1.S1_at11/116+5294023..5296674F-box domain containing protein, expressed
LOC_Os06g10310OsAffx.27547.1.S1_x_at9/116+5299278..5300570growth-regulating factor 1, putative
LOC_Os06g10320NANA6+5304529..5305732hypothetical protein
LOC_Os06g10330NANA6+5306467..5306748Transcription repressor MYB4, putative
LOC_Os06g10340OsAffx.4788.1.S1_s_at11/116+5307708..5309841Autophagy protein Apg12 containing protein, expressed
LOC_Os06g10350Os.3386.1.S1_x_at11/116+5314179..5315848Myb protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4787.1.S1_at--515--7491Chr06:5295806..5295830 (25 bp)
GTGGTGTTTCCAAGCGTGCAAAATC
LOC_Os06g10300
OsAffx.4787.1.S1_at--859--10231Chr06:5295848..5295964 (25 bp)
TTTGGGCTACAGTTTCCTTGGTTAT
LOC_Os06g10300
OsAffx.4787.1.S1_at--862--6671Chr06:5296005..5296029 (25 bp)
GTTGCTATTGCCTCAATGTTCTGGA
LOC_Os06g10300
OsAffx.4787.1.S1_at--379--6031Chr06:5296093..5296384 (25 bp)
GAGATCCATTTCAATGTACCTGGCT
LOC_Os06g10300
OsAffx.4787.1.S1_at--780--5011Chr06:5296393..5296417 (25 bp)
GCAGGGATACCGGTTCTCAGGAGCC
LOC_Os06g10300
OsAffx.4787.1.S1_at--429--5871Chr06:5296413..5296437 (25 bp)
GAGCCTCCCAAAGTGTCCATACAAG
LOC_Os06g10300
OsAffx.4787.1.S1_at--501--2691Chr06:5296484..5296508 (25 bp)
AAGCTGAATTTCTTGTCCACGCAGT
LOC_Os06g10300
OsAffx.4787.1.S1_at--592--5511Chr06:5296554..5296578 (25 bp)
GAAAATAGGCGTCCGTTCTGCTCAA
LOC_Os06g10300
OsAffx.4787.1.S1_at--497--5531Chr06:5296585..5296609 (25 bp)
GAAAGCGCCGGTGGTTACGTTGCTA
LOC_Os06g10300
OsAffx.4787.1.S1_at--397--10471Chr06:5296599..5296623 (25 bp)
TTACGTTGCTAGAAGCTGCCTTGCA
LOC_Os06g10300
OsAffx.4787.1.S1_at--874--9011Chr06:5296620..5296644 (25 bp)
TGCAAGCATTGTTTCACCCAAGACC
LOC_Os06g10300
Target Sequence 
GTGGTGTTTCCAAGCGTGCAAAATCTGACTGTGCATGCTAATTTTGGGCTACAGTTTCCTTGGTTATTGTCAACTAAATC
AAAGTTTATTCAACTTAAGTATTTGAAGTTGCTATTGCCTCAATGTTCTGGAGATATGGACAACATTGTCTATCTAGCTT
CTTTTCTGAAGGCTGCCCCTCTCCTTGAAGTTTTGGAGATCCATTTCAATGTACCTGGCTACGAAGATGCAGGGATACCG
GTTCTCAGGAGCCTCCCAAAGTGTCCATACAAGAACCTGAAGAGCATATACATCACAGGGTTCAGAGGCCTGAAAGGCCA
AGCTGAATTTCTTGTCCACGCAGTGGAAAATGCCCCGGCTCTGGAGGTGCTAACCATTGACACAGCAACGAAAATAGGCG
TCCGTTCTGCTCAACACATCGAAAGCGCCGGTGGTTACGTTGCTAGAAGCTGCCTTGCAAGCATTGTTTCACCCAAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis