Browse Element(s) Details


Os.3386.1.S1_x_at

Description gb:AK062487.1
DB_XREF= gi:32972505
TID=Os.3386.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3386 (NCBI UniGene Cluster)
UG_TITLE=MRNA for transcriptional activator
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-H02, full insert sequence.
FL= gb:AK062487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1035011/11Myb protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10290OsAffx.15351.1.S1_at11/116+5287462..5292461F-box domain containing protein
LOC_Os06g10300OsAffx.4787.1.S1_at11/116+5294023..5296674F-box domain containing protein, expressed
LOC_Os06g10310OsAffx.27547.1.S1_x_at9/116+5299278..5300570growth-regulating factor 1, putative
LOC_Os06g10320NANA6+5304529..5305732hypothetical protein
LOC_Os06g10330NANA6+5306467..5306748Transcription repressor MYB4, putative
LOC_Os06g10340OsAffx.4788.1.S1_s_at11/116+5307708..5309841Autophagy protein Apg12 containing protein, expressed
LOC_Os06g10350Os.3386.1.S1_x_at11/116+5314179..5315848Myb protein, putative, expressed
LOC_Os06g10360NANA6+5322131..5325222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10370NANA6+5326809..5329732transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g10380Os.14491.2.S1_x_at5/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10380Os.47463.1.S1_x_at3/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10390NANA6+5336000..5339629retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009813biological_processflavonoid biosynthesis
GO:0009845biological_processseed germination
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3386.1.S1_x_at--841--9691Chr06:5314194..5314218 (25 bp)
TCACACCGCACAGAGACAGAGAAGA
LOC_Os06g10350
Os.3386.1.S1_x_at--1011--1931Chr06:5315375..5315399 (25 bp)
ACGGCGATGACGTCGACTGCGACTA
LOC_Os06g10350
Os.3386.1.S1_x_at--287--5731Chr06:5315389..5315413 (25 bp)
GACTGCGACTACTACTGCAGCGGCA
LOC_Os06g10350
Os.3386.1.S1_x_at--756--1891Chr06:5315434..5315458 (25 bp)
ACGTCGTCGAGCTCATTACCGGCGG
LOC_Os06g10350
Os.3386.1.S1_x_at--880--1371Chr06:5315506..5315530 (25 bp)
AGAGCCTTGGCGTCGTTTCTTGACA
LOC_Os06g10350
Os.3386.1.S1_x_at--134--1791Chr06:5315530..5315554 (25 bp)
ACCGACGACGCCTGGAACTTGTGTG
LOC_Os06g10350
Os.3386.1.S1_x_at--673--4471Chr06:5315539..5315563 (25 bp)
GCCTGGAACTTGTGTGCGTGACATT
LOC_Os06g10350
Os.3386.1.S1_x_at--1010--4651Chr06:5315554..5315578 (25 bp)
GCGTGACATTAGTTCGTCGTCCGTA
LOC_Os06g10350
Os.3386.1.S1_x_at--883--6612Chr08:20975304..20975489 (25 bp)
GTCGTCCGTACGTACCTACGTATAT
NONE
Os.3386.1.S1_x_at--311--4031Chr06:5315579..5315603 (25 bp)
CGTACCTACGTATATGCATGTGTGC
LOC_Os06g10350
Os.3386.1.S1_x_at--797--4991Chr06:5315594..5315618 (25 bp)
GCATGTGTGCGTCTCATAGAATGAA
LOC_Os06g10350
Target Sequence 
TCACACCGCACAGAGACAGAGAAGAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGA
CACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGT
TCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGAC
GTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGA
GCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGA
ACTTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCTCATAGAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3386.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis