Browse Element(s) Details


OsAffx.4788.1.S1_s_at

Description tigr:9634.m01007
TID=OsAffx.4788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=autophagy 12b AtAPG12b, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1034011/11Autophagy protein Apg12 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10280NANA6+5278097..5284927CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os06g10290OsAffx.15351.1.S1_at11/116+5287462..5292461F-box domain containing protein
LOC_Os06g10300OsAffx.4787.1.S1_at11/116+5294023..5296674F-box domain containing protein, expressed
LOC_Os06g10310OsAffx.27547.1.S1_x_at9/116+5299278..5300570growth-regulating factor 1, putative
LOC_Os06g10320NANA6+5304529..5305732hypothetical protein
LOC_Os06g10330NANA6+5306467..5306748Transcription repressor MYB4, putative
LOC_Os06g10340OsAffx.4788.1.S1_s_at11/116+5307708..5309841Autophagy protein Apg12 containing protein, expressed
LOC_Os06g10350Os.3386.1.S1_x_at11/116+5314179..5315848Myb protein, putative, expressed
LOC_Os06g10360NANA6+5322131..5325222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10370NANA6+5326809..5329732transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g10380Os.14491.2.S1_x_at5/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10380Os.47463.1.S1_x_at3/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4788.1.S1_s_at--60--1271Chr06:5309068..5309092 (25 bp)
AGATCATTGACTTTCTTCGCCGACA
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--130--3651Chr06:5309082..5309106 (25 bp)
CTTCGCCGACAAATTCACCAGGATA
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--977--1711Chr06:5309098..5309203 (25 bp)
ACCAGGATACAGTGTTTCTCTATGT
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--820--5491Chr06:5309204..5309228 (25 bp)
GAACAGTGCATTTTCACCAAATCCA
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--403--5251Chr06:5309551..5309575 (25 bp)
GAATCGACGGGCAACTGGTGGTTAA
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--991--3891Chr06:5309565..5309589 (25 bp)
CTGGTGGTTAACTATGCATCATCGA
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--1088--10331Chr06:5309664..5309688 (25 bp)
TTTACTTGCCGAAACACTCATCATG
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--456--9811Chr06:5309705..5309729 (25 bp)
TAACTTCAAAGCGAAGCTCTTTCGA
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--720--151Chr06:5309733..5309757 (25 bp)
ATTATTCGGTACACGTTGATGTCAG
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--279--3331Chr06:5309744..5309768 (25 bp)
CACGTTGATGTCAGTAGCAGCAGCT
LOC_Os06g10340
OsAffx.4788.1.S1_s_at--646--8291Chr06:5309782..5309806 (25 bp)
GGCTTTCAGCCCCACTGTAAAACTG
LOC_Os06g10340
Target Sequence 
AGATCATTGACTTTCTTCGCCGACAAATTCACCAGGATACAGTGTTTCTCTATGTGAACAGTGCATTTTCACCAAATCCA
GATGAGTTGATAATCGACCTATACAATAACTTTGGAATCGACGGGCAACTGGTGGTTAACTATGCATCATCGATGGCATG
GGGCTGAAAGGCTGTACCTGCTGGAGAGAGGAAACTTCAATCAACATGGAAAAACCTGTGTACAAAATTTACTTGCCGAA
ACACTCATCATGTAAATTGCTGAGAATTTAACTTCAAAGCGAAGCTCTTTCGAATTATTATTCGGTACACGTTGATGTCA
GTAGCAGCAGCTGCAATTTTCACGGGGCTTTCAGCCCCACTGTAAAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4788.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis