Browse Element(s) Details


Os.1811.1.S1_at

Description gb:AB042415.1
DB_XREF= gi:13536992
GEN=OsRPA70a
TID=Os.1811.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1811 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPA70a mRNA for replication protein A 70kDa, complete cds.
PROD=replication protein A 70kDa
FL= gb:AK059230.1 gb:AB042415.1 gb:AK101212.1 gb:AK072308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5368011/11replication factor-a protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53640OsAffx.9045.1.S1_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_x_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53650OsAffx.22848.4.S1_at2/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.4.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.3.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53660OsAffx.12627.1.S1_at11/112+32816969..32817880expressed protein
LOC_Os02g53670Os.14008.1.S1_at11/112+32821977..32826900Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g53680Os.1811.1.S1_at11/112+32826963..32830612replication factor-a protein 1 containing protein, expressed
LOC_Os02g53690Os.2347.1.S1_a_at11/112+32834495..32836587expressed protein
LOC_Os02g53690OsAffx.27547.1.S1_x_at1/112+32834495..32836587expressed protein
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1811.1.S1_at--261--2811Chr02:32827615..32827639 (25 bp)
AAGATCACTCGGGAACAGCTTGGGT
LOC_Os02g53680
Os.1811.1.S1_at--779--9431Chr02:32827550..32827574 (25 bp)
TCGGCAACAGAGCTCAACGCACTTA
LOC_Os02g53680
Os.1811.1.S1_at--1140--5631Chr02:32827499..32827523 (25 bp)
GACACCATGCTCAATTGCTTGTTTC
LOC_Os02g53680
Os.1811.1.S1_at--673--2851Chr02:32827343..32827367 (25 bp)
AAGTCCTCGGCGCTACATTAGCAGA
LOC_Os02g53680
Os.1811.1.S1_at--949--1511Chr02:32827324..32827348 (25 bp)
AGCAGACTGTGCTACTCTATCAGCT
LOC_Os02g53680
Os.1811.1.S1_at--307--7391Chr02:32827270..32827294 (25 bp)
GTGAGGTGTTGCAGTGCCCATAGCC
LOC_Os02g53680
Os.1811.1.S1_at--1065--4791Chr02:32827234..32827258 (25 bp)
GCTCGATTTTTGTGCCGGTACTTTA
LOC_Os02g53680
Os.1811.1.S1_at--1064--6491Chr02:32827142..32827166 (25 bp)
GATATTTCCATTTTTGTGCCGGTAC
LOC_Os02g53680
Os.1811.1.S1_at--984--1531Chr02:32827090..32827114 (25 bp)
AGCTTTTATACCTTTTTCTCGATCA
LOC_Os02g53680
Os.1811.1.S1_at--999--2991Chr02:32827065..32827089 (25 bp)
AATGATTGCCTTCTAGCTGCAGTGC
LOC_Os02g53680
Os.1811.1.S1_at--1040--3831Chr02:32827049..32827073 (25 bp)
CTGCAGTGCAATTTCTCCCTTAGTT
LOC_Os02g53680
Target Sequence 
AAGATCACTCGGGAACAGCTTGGGTGACAGCATTCCAGGAGGCTGGGCAGGAGTTGCTTGGCTGCTCGGCAACAGAGCTC
AACGCACTTAAGGAGCGCGAGGACCCTCGGTTTGCAGACACCATGCTCAATTGCTTGTTTCAGGAATATCTGCTCAGGCT
GAAGGTCAAAGAAGAATCATACGGCGATGAGCGCAAAGTGAAGAACACCGCGGTCAAAGTGGAGAAGGTTGATCCTTCGG
GTGAAAGTAAATTTCTGCTGGATTTGATCTCCAAGTCCTCGGCGCTACATTAGCAGACTGTGCTACTCTATCAGCTGCTC
GCTCGTGCGTGGTGAGGTGAGCGAGGTGAGGTGTTGCAGTGCCCATAGCCCTCGCCCTCCTGCTCGATTTTTGTGCCGGT
ACTTTAATATTAACGCCACTTAATAGTTTATATCCAGATTAGTGCTTTAATAGTTTATATCCAGATTAGTGCTGATATTT
CCATTTTTGTGCCGGTACTTTAATATTAACGCCACTTAATGTATCAGCTTTTATACCTTTTTCTCGATCAAATGATTGCC
TTCTAGCTGCAGTGCAATTTCTCCCTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis