Browse Element(s) Details


Os.12689.1.S1_at

Description gb:AK060260.1
DB_XREF= gi:32970278
TID=Os.12689.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-H01, full insert sequence.
FL= gb:AK060260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5372011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53700Os.51009.1.S1_x_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.1.S1_at11/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53700Os.8942.2.S1_at10/112+32852915..32864528DENN domain containing protein, expressed
LOC_Os02g53710OsAffx.12628.1.S1_at11/112+32867520..32868028hypothetical protein
LOC_Os02g53720Os.12689.1.S1_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.3058.1.S1_x_at11/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53720OsAffx.23091.2.S1_x_at1/112+32880974..32883851Protein kinase domain containing protein, expressed
LOC_Os02g53730OsAffx.24855.1.S1_at10/112+32884932..32886035hypothetical protein
LOC_Os02g53740Os.22677.1.S1_a_at6/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53740Os.22677.3.S1_x_at2/112+32890574..32907894myosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12689.1.S1_at--91--6951Chr02:32883525..32883549 (25 bp)
GTAGAGTGACTATCTGAATATCCTG
LOC_Os02g53720
Os.12689.1.S1_at--564--5231Chr02:32883540..32883564 (25 bp)
GAATATCCTGATGGCTTTGTGCTTT
LOC_Os02g53720
Os.12689.1.S1_at--484--10251Chr02:32883555..32883579 (25 bp)
TTTGTGCTTTGTGGCGTTGGCGTTC
LOC_Os02g53720
Os.12689.1.S1_at--130--4611Chr02:32883568..32883592 (25 bp)
GCGTTGGCGTTCTAGCTAAGTTACC
LOC_Os02g53720
Os.12689.1.S1_at--1071--9531Chr02:32883578..32883602 (25 bp)
TCTAGCTAAGTTACCAGCTTTTGTG
LOC_Os02g53720
Os.12689.1.S1_at--200--8131Chr02:32883622..32883646 (25 bp)
GGACACCGACGAAGGGCTGGCTATT
LOC_Os02g53720
Os.12689.1.S1_at--104--7051Chr02:32883654..32883678 (25 bp)
GTAAATATGCTGTCTTCTGGTTTGT
LOC_Os02g53720
Os.12689.1.S1_at--194--9471Chr02:32883669..32883693 (25 bp)
TCTGGTTTGTTAGGCCTTCGGAAAG
LOC_Os02g53720
Os.12689.1.S1_at--68--9431Chr02:32883686..32883710 (25 bp)
TCGGAAAGCTATTTGGCCTTCCTGT
LOC_Os02g53720
Os.12689.1.S1_at--364--8431Chr02:32883700..32883724 (25 bp)
GGCCTTCCTGTTTTGATCAGTTTTT
LOC_Os02g53720
Os.12689.1.S1_at--591--1211Chr02:32883718..32883742 (25 bp)
AGTTTTTCTTCTTATCATTATTAGT
LOC_Os02g53720
Target Sequence 
GTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGNC
CTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCC
TTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis