Browse Element(s) Details


Os.27359.1.S1_at

Description gb:AK101676.1
DB_XREF= gi:32986885
TID=Os.27359.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full insert sequence.
FL= gb:AK101676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2066011/11Sucrose-phosphate synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20630NANA8+12387438..12387656hypothetical protein
LOC_Os08g20644OsAffx.17091.1.S1_at11/118+12401693..12402157expressed protein
LOC_Os08g20660Os.27359.1.S1_at11/118+12405895..12418726Sucrose-phosphate synthase 1, putative, expressed
LOC_Os08g20670OsAffx.29289.1.S1_at10/118+12420977..12422121hypothetical protein
LOC_Os08g20680Os.11220.1.S1_at11/118+12423980..12424983expressed protein
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27359.1.S1_at--483--6471Chr08:12415108..12415132 (25 bp)
GATAACCTTAAGTCAGCTCTACAAC
LOC_Os08g20660
Os.27359.1.S1_at--268--1431Chr08:12418304..12418328 (25 bp)
AGAAACGAGCAGTAGGGCTCCCTCT
LOC_Os08g20660
Os.27359.1.S1_at--775--9132Chr09:19787856..19787875 (20 bp)
TGCGGTTCTATATCATCTCACACGG
NONE
Os.27359.1.S1_at--1069--9511Chr08:12418345..12418369 (25 bp)
TCTCACACGGCACCAATAAGCTTTG
LOC_Os08g20660
Os.27359.1.S1_at--556--31Chr08:12418383..12418407 (25 bp)
ATTGGGCTATCGTTCTATGGCCCTT
LOC_Os08g20660
Os.27359.1.S1_at--862--231Chr08:12418492..12418516 (25 bp)
ATATCGCAATAAGGCCGGTGCTTAC
LOC_Os08g20660
Os.27359.1.S1_at--1098--5331Chr08:12418567..12418591 (25 bp)
GAAGTATTGCTTGGGTCCGGTCGTC
LOC_Os08g20660
Os.27359.1.S1_at--853--8051Chr08:12418593..12418617 (25 bp)
GGAGACTCCGGATATGTTCACCTGT
LOC_Os08g20660
Os.27359.1.S1_at--716--6751Chr08:12418608..12418632 (25 bp)
GTTCACCTGTTTGAGGTTTCACCGT
LOC_Os08g20660
Os.27359.1.S1_at--971--9651Chr08:12418626..12418650 (25 bp)
TCACCGTTTTGGTTGGTTCGTCTCA
LOC_Os08g20660
Os.27359.1.S1_at--168--1591Chr08:12418650..12418674 (25 bp)
AGCTCTCCTTCAGACTACTGTAAGT
LOC_Os08g20660
Target Sequence 
GATAACCTTAAGTCAGCTCTACAACAATTTGGTATACTGAAAGACAATGTTTAACTTTGAGAGAAATCAAGTAGTTTCAA
GTAGCATTTATTCTACGTGATCGAGATTGAGAAACGAGCAGTAGGGCTCCCTCTCTGCGGTTCTATATCATCTCACACGG
CACCAATAAGCTTTGCACCCTGGTGAACATTGGGCTATCGTTCTATGGCCCTTGCTGCAACCAGAGATGGGGGATACAGA
CTTGCTTCTGTTTATCCAATGTAAAACTGATGATGATGAGTTCTCTAACTGTATAGTATATCGCAATAAGGCCGGTGCTT
ACAGAAGGCACTGTGTGCATAACATTGTTTTGTTGCTCAATCGGAATATTTTGAAGTATTGCTTGGGTCCGGTCGTCCGG
AGACTCCGGATATGTTCACCTGTTTGAGGTTTCACCGTTTTGGTTGGTTCGTCTCAGCTCTCCTTCAGACTACTGTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis