Browse Element(s) Details


OsAffx.19985.1.S1_at

Description tigr:9640.m03519
TID=OsAffx.19985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3633011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36300OsAffx.7806.1.S1_at11/1112+22192757..22193038hypothetical protein
LOC_Os12g36310OsAffx.7807.1.S1_at11/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_x_at1/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_at1/1112+22196436..22199755expressed protein
LOC_Os12g36320OsAffx.32054.1.S1_at11/1112+22204348..22205725hypothetical protein
LOC_Os12g36330OsAffx.19985.1.S1_at11/1112+22211311..22213339hypothetical protein
LOC_Os12g36340NANA12+22215017..22216003hypothetical protein
LOC_Os12g36350OsAffx.7809.1.S1_at11/1112+22218928..22221282hypothetical protein
LOC_Os12g36360Os.46610.1.S1_x_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360OsAffx.22143.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.11220.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36360Os.53292.1.S1_at1/1112+22226753..22230339hypothetical protein
LOC_Os12g36370Os.40855.2.S1_x_at7/1112+22234810..22235982hypothetical protein
LOC_Os12g36370Os.40360.1.S1_x_at1/1112+22234810..22235982hypothetical protein
LOC_Os12g36380NANA12+22236585..22239727hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19985.1.S1_at--203--1131Chr12:22212181..22212205 (25 bp)
AGTGCTCGAATTGTTCTAGCCCTGA
LOC_Os12g36330
OsAffx.19985.1.S1_at--933--8951Chr12:22212159..22212183 (25 bp)
TGACATCATGCTAGACCTCACCGTG
LOC_Os12g36330
OsAffx.19985.1.S1_at--804--31Chr12:22212053..22212077 (25 bp)
ATTGACAACCCTCATTGTTCCATAG
LOC_Os12g36330
OsAffx.19985.1.S1_at--200--311Chr12:22212032..22212056 (25 bp)
ATAGCGACGCATGCCAAGTGTTCGA
LOC_Os12g36330
OsAffx.19985.1.S1_at--116--2871Chr12:22212017..22212041 (25 bp)
AAGTGTTCGACTTTGGGCCTCGATG
LOC_Os12g36330
OsAffx.19985.1.S1_at--137--4471Chr12:22212001..22212025 (25 bp)
GCCTCGATGTCAATGGTAGCGCCAA
LOC_Os12g36330
OsAffx.19985.1.S1_at--972--7411Chr12:22211963..22211987 (25 bp)
GTGTTCCCTACCATTACAGCTATGA
LOC_Os12g36330
OsAffx.19985.1.S1_at--842--3091Chr12:22211897..22211921 (25 bp)
AATACGTCAGTCATCCTTGTTGTCA
LOC_Os12g36330
OsAffx.19985.1.S1_at--545--10471Chr12:22211406..22211430 (25 bp)
TTAAATTTCCCCTACTGCACATATG
LOC_Os12g36330
OsAffx.19985.1.S1_at--94--5391Chr12:22211368..22211392 (25 bp)
GAAGCTTCGAGGCTTGTTCACAAAT
LOC_Os12g36330
OsAffx.19985.1.S1_at--365--2971Chr12:22211346..22211370 (25 bp)
AATGGAGCCTTGTGCATACATTCAA
LOC_Os12g36330
Target Sequence 
AGTGCTCGAATTGTTCTAGCCCTGACATCATGCTAGACCTCACCGTGGCTGTGGGGGTTTCATGTGCCACTACTTCTATG
GCCTCCATGGAGTTGTTGGTTGGCGAGGATGAAACCAGTGTCATCTACATTGACAACCCTCATTGTTCCATAGCGACGCA
TGCCAAGTGTTCGACTTTGGGCCTCGATGTCAATGGTAGCGCCAACCAACCTGTGGTCGTGTTCCCTACCATTACAGCTA
TGAATGGGCATAGCATCATTCCAACTCTGCCTCTGACCATTATGAATACGTCAGTCATCCTTGTTGTCAAATCAAGTTGT
GCTAGCGACAATTCTATCAGACTTATGACTCTATATAATGGATTCAGTTGTGTTATTGCAGAGACAAAAATGATATACGT
AGCTACTGTTGTGAGGTTCAGTTTGTGCTATATGCAGATGGGTGCTATGAAACCTTCAAGTGTTATACAATGGTTAAATT
TCCCCTACTGCACATATGACGGATTCAAGCGGAAGCTTCGAGGCTTGTTCACAAATGGAGCCTTGTGCATACATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis