Browse Element(s) Details


OsAffx.7806.1.S1_at

Description tigr:9640.m03516
TID=OsAffx.7806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3630011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36250NANA12+22172827..22173273retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36260NANA12+22174374..22178732retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36270Os.17439.1.S1_at11/1112+22180505..22185525expressed protein
LOC_Os12g36300OsAffx.7806.1.S1_at11/1112+22192757..22193038hypothetical protein
LOC_Os12g36310OsAffx.7807.1.S1_at11/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_x_at1/1112+22196436..22199755expressed protein
LOC_Os12g36310Os.55356.1.S1_at1/1112+22196436..22199755expressed protein
LOC_Os12g36320OsAffx.32054.1.S1_at11/1112+22204348..22205725hypothetical protein
LOC_Os12g36330OsAffx.19985.1.S1_at11/1112+22211311..22213339hypothetical protein
LOC_Os12g36340NANA12+22215017..22216003hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7806.1.S1_at--387--8271Chr12:22192979..22193003 (25 bp)
GGCAGTCTGGATGAGGGTAATCATC
LOC_Os12g36300
OsAffx.7806.1.S1_at--1043--7052Chr12:22268233..22268257 (25 bp)
GTAATCATCGTGAGACACCAAAAGT
NONE
OsAffx.7806.1.S1_at--1036--7373Chr12:22268242..22268266 (25 bp)
GTGAGACACCAAAAGTCCTTCTTGT
NONE
OsAffx.7806.1.S1_at--653--2851Chr12:22192942..22192966 (25 bp)
AAGTCCTTCTTGTTCAACGCAGAGA
LOC_Os12g36300
OsAffx.7806.1.S1_at--899--6751Chr12:22192931..22192955 (25 bp)
GTTCAACGCAGAGACGAAGCCACCA
LOC_Os12g36300
OsAffx.7806.1.S1_at--330--2211Chr12:22192900..22192924 (25 bp)
ACAACGGTGGTCCAGGTGAACATCA
LOC_Os12g36300
OsAffx.7806.1.S1_at--985--8931Chr12:22192860..22192884 (25 bp)
TGACTGCCATCGACAAGTACCCCAT
LOC_Os12g36300
OsAffx.7806.1.S1_at--452--5611Chr12:22192849..22192873 (25 bp)
GACAAGTACCCCATGAGCACCGCAT
LOC_Os12g36300
OsAffx.7806.1.S1_at--657--671Chr12:22192837..22192861 (25 bp)
ATGAGCACCGCATACTTGTTGATGT
LOC_Os12g36300
OsAffx.7806.1.S1_at--464--10791Chr12:22192822..22192846 (25 bp)
TTGTTGATGTTGACTACTTCCGGCC
LOC_Os12g36300
OsAffx.7806.1.S1_at--411--731Chr12:22192816..22192840 (25 bp)
ATGTTGACTACTTCCGGCCACAGCT
LOC_Os12g36300
Target Sequence 
GGCAGTCTGGATGAGGGTAATCATCGTGAGACACCAAAAGTCCTTCTTGTTCAACGCAGAGACGAAGCCACCAAGGAGAA
CAACGGTGGTCCAGGTGAACATCAAGAAGGCCAGGCCCCTGACTGCCATCGACAAGTACCCCATGAGCACCGCATACTTG
TTGATGTTGACTACTTCCGGCCACAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis