Browse Element(s) Details


Os.53964.1.S1_at

Description gb:AK101059.1
DB_XREF= gi:32986268
TID=Os.53964.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022A10, full insert sequence.
FL= gb:AK101059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3617011/11G14587-6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36120NANA12+22110194..22113212retrotransposon protein, putative, unclassified
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein
LOC_Os12g36170Os.53964.1.S1_at11/1112+22130214..22136367G14587-6, putative, expressed
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53964.1.S1_at--996--9131Chr12:22130738..22130762 (25 bp)
TGCGGACCCTGCTCAAGGACTACAA
LOC_Os12g36170
Os.53964.1.S1_at--147--9931Chr12:22130696..22130720 (25 bp)
TACTGGTGGCGGACAAGCAGCTGCA
LOC_Os12g36170
Os.53964.1.S1_at--184--5311Chr12:22130671..22130695 (25 bp)
GAAGGAGCTCCTCTACGACATGCAG
LOC_Os12g36170
Os.53964.1.S1_at--845--4751Chr12:22130473..22130497 (25 bp)
GCTGAACTCGATGAGCGTGCCCAAG
LOC_Os12g36170
Os.53964.1.S1_at--1037--4651Chr12:22130459..22130483 (25 bp)
GCGTGCCCAAGGTGAGGTCCATGCT
LOC_Os12g36170
Os.53964.1.S1_at--731--4911Chr12:22130389..22130413 (25 bp)
GCTTGAGCCGTTTGGGTCCGACGAT
LOC_Os12g36170
Os.53964.1.S1_at--791--5771Chr12:22130370..22130394 (25 bp)
GACGATGAGAATTAGCGTGCCATAT
LOC_Os12g36170
Os.53964.1.S1_at--935--8231Chr12:22130345..22130369 (25 bp)
GGCAGAAGCTTTAGGTTGGCCTGAT
LOC_Os12g36170
Os.53964.1.S1_at--714--10111Chr12:22130300..22130324 (25 bp)
TATGATGCTAACTTTGACCGGTTTA
LOC_Os12g36170
Os.53964.1.S1_at--257--10491Chr12:22130267..22130291 (25 bp)
TTACAAGCTCAGTTTCTCGCTGACG
LOC_Os12g36170
Os.53964.1.S1_at--271--9511Chr12:22130253..22130277 (25 bp)
TCTCGCTGACGGTTTTGTACATGGA
LOC_Os12g36170
Target Sequence 
TGCGGACCCTGCTCAAGGACTACAAGAACGAGTTCGACGAGATACTGGTGGCGGACAAGCAGCTGCAGAAGGAGCTCCTC
TACGACATGCAGAAGCTCGACGTCGCCGGCAAGGGCAAGGCCAAGGCCGCAGCTGCTGCGGAGGCTGGGCCAAGCGGAGG
CCTCGCCGGCGGTGAACGGTGGCGGCAAGAGGGCGGCGGACGGCTCGGCGAGGGCCACGGCGAGGTCGGTGCTCAAGGAG
GTGAACCGGAACACGCCGACGCCGCCGCTGAACTCGATGAGCGTGCCCAAGGTGAGGTCCATGCTGGGCGTCGGCTCGCG
CCGGCCCGCTGTGCTGGAGTCGGTCCGGCGGCTTGAGCCGTTTGGGTCCGACGATGAGAATTAGCGTGCCATATGGCAGA
AGCTTTAGGTTGGCCTGATGGTCAGTATTAGGCTGTGTTTATGATGCTAACTTTGACCGGTTTAGGAGAAAATTACAAGC
TCAGTTTCTCGCTGACGGTTTTGTACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis