Browse Element(s) Details


Os.15688.2.S1_x_at

Description gb:AK067126.1
DB_XREF= gi:32977144
TID=Os.15688.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096O03, full insert sequence.
FL= gb:AK067126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3611011/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36084NANA12+22088476..22089137NA
LOC_Os12g36100Os.52203.1.S1_at6/1112+22093425..22099482kinesin motor protein, putative, expressed
LOC_Os12g36110Os.15688.2.S1_x_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36110Os.15688.1.S1_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36120NANA12+22110194..22113212retrotransposon protein, putative, unclassified
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15688.2.S1_x_at--367--6991Chr12:22101330..22101354 (25 bp)
GTACCGCTTCATAGGTTCCATTGTG
LOC_Os12g36110
Os.15688.2.S1_x_at--556--2151Chr12:22101274..22101295 (22 bp)
ACAGCAGATCCCAACTTGTGGTCAA
LOC_Os12g36110
Os.15688.2.S1_x_at--151--7511Chr12:22101170..22101192 (23 bp)
GTGGTCAATACAATTCAGCCCTGGC
LOC_Os12g36110
Os.15688.2.S1_x_at--980--6511Chr12:22100979..22101003 (25 bp)
GATTTGTGCAGGGTCAAACCTCCAA
LOC_Os12g36110
Os.15688.2.S1_x_at--107--2631Chr12:22100963..22100987 (25 bp)
AACCTCCAACGTGCAGTTTAGCCAA
LOC_Os12g36110
Os.15688.2.S1_x_at--610--7612Chr12:22100927..22100951 (25 bp)
GGGCAATTTTATCCCACATCATTCA
LOC_Os12g36110
Os.15688.2.S1_x_at--1029--5231Chr12:22100874..22100898 (25 bp)
GAATCACTCCTCTGTGTATACCTAA
LOC_Os12g36110
Os.15688.2.S1_x_at--65--8931Chr12:22100762..22100786 (25 bp)
TGAGCGATCTCATTCACCTGAAGAA
LOC_Os12g36110
Os.15688.2.S1_x_at--663--9591Chr12:22100612..22100761 (25 bp)
TCATACAAGCGCTTTTCTCCAGATA
LOC_Os12g36110
Os.15688.2.S1_x_at--944--9491Chr12:22100597..22100621 (25 bp)
TCTCCAGATAATTTCCTCCATACAG
LOC_Os12g36110
Os.15688.2.S1_x_at--335--7531Chr12:22100564..22100588 (25 bp)
GTGGCTTTGATGCAACCTCACTTAG
LOC_Os12g36110
Target Sequence 
GTACCGCTTCATAGGTTCCATTGTGGGGGAACTTCTATGTTGACTGACTTTATTCCTAAACAGCAGATCCCAACTTGTGG
TCAATACAATTCAGCCCTGGCTGGTCAACCATTTGAATCAACGGAGAACTTTTCTTCATTCCAAGAAGCCTCTAATGCTT
CAGTGGATATGTCAAGATTTGTGCAGGGTCAAACCTCCAACGTGCAGTTTAGCCAACAGTTGGGCATGGGCAATTTTATC
CCACATCATTCAAATCAAGGAACATTCATACCCAGACCAAGAATCACTCCTCTGTGTATACCTAATACCGAAAAAACATA
TTTTAATCCAAACGCTCATAGCAGCATCCAGGCTGATCATGCTGCCACACGAATTGGCCAGTATGCACATAATGAGCGAT
CTCATTCACCTGAAGAATCATACAAGCGCTTTTCTCCAGATAATTTCCTCCATACAGATGAAGTTGTGGCTTTGATGCAA
CCTCACTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15688.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis