Browse Element(s) Details


OsAffx.30224.1.S1_at

Description tigr:9638.m00043
TID=OsAffx.30224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0140011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01360NANA10+199481..204775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01370OsAffx.18069.1.S1_at11/1110+207704..208150expressed protein
LOC_Os10g01370OsAffx.7657.1.S1_x_at1/1110+207704..208150expressed protein
LOC_Os10g01380Os.27723.1.S1_a_at11/1110+212904..218022hypothetical protein
LOC_Os10g01380Os.38157.1.S1_s_at1/1110+212904..218022hypothetical protein
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30224.1.S1_at--436--4111Chr10:227748..227772 (25 bp)
CGAAGACGCAATGCGGCCAGGCGAC
LOC_Os10g01400
OsAffx.30224.1.S1_at--837--8472Chr10:227789..227813 (25 bp)
TGGCGATCAGGCGACGGCTAGATCC
LOC_Os10g01400
OsAffx.30224.1.S1_at--1016--9071Chr10:228457..228481 (25 bp)
TGCTCAGTTGGTGGTTGTTGCTGAT
LOC_Os10g01400
OsAffx.30224.1.S1_at--1024--10071Chr10:228487..228511 (25 bp)
TAGGTGCATTTTTGGCATGGCGGTT
LOC_Os10g01400
OsAffx.30224.1.S1_at--1045--1232Chr10:228515..228539 (25 bp)
AGATTACGGGTAAAAGCTAGCCTAT
LOC_Os10g01400
OsAffx.30224.1.S1_at--1096--2332Chr10:228527..228551 (25 bp)
AAAGCTAGCCTATTTGGGTCGACAA
LOC_Os10g01400
OsAffx.30224.1.S1_at--280--10252Chr10:228539..228563 (25 bp)
TTTGGGTCGACAACAGCAACGCTTG
LOC_Os10g01400
OsAffx.30224.1.S1_at--425--3612Chr10:228560..228584 (25 bp)
CTTGCGGGTGCTGCTTTCCCTTGGT
LOC_Os10g01400
OsAffx.30224.1.S1_at--351--9072Chr10:228584..228608 (25 bp)
TGCATTGTTGCAGAATCTCTCCTAC
LOC_Os10g01400
OsAffx.30224.1.S1_at--510--4292Chr10:228611..228635 (25 bp)
CCTCCCTCTAATGGATTTCTTCAGG
LOC_Os10g01400
OsAffx.30224.1.S1_at--179--1053Chr10:228633..228657 (25 bp)
AGGTGAAAACCACGTCCTGTCCCAG
LOC_Os10g01400
Target Sequence 
CGAAGACGCAATGCGGCCAGGCGACGGCGTGAGGCGGCTCGTGGCGATCAGGCGACGGCTAGATCCGGTGCTCAGTTGGT
GGTTGTTGCTGATGCGAGTAGGTGCATTTTTGGCATGGCGGTTGGAAGATTACGGGTAAAAGCTAGCCTATTTGGGTCGA
CAACAGCAACGCTTGCGGGTGCTGCTTTCCCTTGGTGCATTGTTGCAGAATCTCTCCTACTCCCTCCCTCTAATGGATTT
CTTCAGGTGAAAACCACGTCCTGTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis