Browse Element(s) Details


OsAffx.18069.1.S1_at

Description tigr:9638.m00039
TID=OsAffx.18069.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0137011/11expressed protein
LOC_Os05g081701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01320OsAffx.20387.1.S1_x_at1/1110+181261..184383retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01330NANA10+185393..187195hypothetical protein
LOC_Os10g01340OsAffx.30222.1.S1_at11/1110+193044..193571hypothetical protein
LOC_Os10g01350NANA10+195468..198369retrotransposon protein, putative, unclassified, expressed
LOC_Os10g01360NANA10+199481..204775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01370OsAffx.18069.1.S1_at11/1110+207704..208150expressed protein
LOC_Os10g01370OsAffx.7657.1.S1_x_at1/1110+207704..208150expressed protein
LOC_Os10g01380Os.27723.1.S1_a_at11/1110+212904..218022hypothetical protein
LOC_Os10g01380Os.38157.1.S1_s_at1/1110+212904..218022hypothetical protein
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18069.1.S1_at--640--4111Chr10:208085..208109 (25 bp)
CCCAGTTTCTCCTCAAACCAAGATT
LOC_Os10g01370
OsAffx.18069.1.S1_at--430--6511Chr10:208064..208088 (25 bp)
GATTCCAAAACCTACTGGGTTCGAG
LOC_Os10g01370
OsAffx.18069.1.S1_at--758--9891Chr10:208052..208076 (25 bp)
TACTGGGTTCGAGGTTAACGAAGCA
LOC_Os10g01370
OsAffx.18069.1.S1_at--66--1491Chr10:208031..208055 (25 bp)
AGCAAACATTGTTCCGGTCACTGTA
LOC_Os10g01370
OsAffx.18069.1.S1_at--808--8211Chr10:207980..208004 (25 bp)
GGAATTCGAACTGATGATGCAGAGC
LOC_Os10g01370
OsAffx.18069.1.S1_at--869--9031Chr10:207963..207987 (25 bp)
TGCAGAGCACTCAGGAACAATTCAT
LOC_Os10g01370
OsAffx.18069.1.S1_at--85--2313Chr01:11133357..11133380 (24 bp)
AAAGGTAGTTGCTGCCGATGAGGTC
NONE
OsAffx.18069.1.S1_at--367--4831Chr10:207864..207888 (25 bp)
GCTCAAGTTCATCCCAAGGCGGTAA
LOC_Os10g01370
OsAffx.18069.1.S1_at--1124--491Chr10:207854..207878 (25 bp)
ATCCCAAGGCGGTAAAGGTGCTGGA
LOC_Os10g01370
OsAffx.18069.1.S1_at--314--1051Chr10:207812..207836 (25 bp)
AGGTGACGGCCTTCAGAATGGTGCA
LOC_Os10g01370
OsAffx.18069.1.S1_at--1004--3911Chr10:207806..207830 (25 bp)
CGGCCTTCAGAATGGTGCAATTAAA
LOC_Os10g01370
Target Sequence 
CCCAGTTTCTCCTCAAACCAAGATTCCAAAACCTACTGGGTTCGAGGTTAACGAAGCAAACATTGTTCCGGTCACTGTAG
ACAAGCTATCACCAGAACAAAAGAAGGAATTCGAACTGATGATGCAGAGCACTCAGGAACAATTCATGAAGTCGTTCGCA
GAAACCCGCGGGAAAGTTTACCAAAAATACAAGGTAAAGGTAGTTGCTGCCGATGAGGTCGGCTCAAGTTCATCCCAAGG
CGGTAAAGGTGCTGGAGATGCTTCAGGCGACAAAGGTGACGGCCTTCAGAATGGTGCAATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis