Browse Element(s) Details


OsAffx.30222.1.S1_at

Description tigr:9638.m00036
TID=OsAffx.30222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0134011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01274OsAffx.30220.2.S1_x_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01274OsAffx.30220.1.S1_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01290Os.46539.1.S1_at11/1110+171016..172684expressed protein
LOC_Os10g01300NANA10+174729..176764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01310NANA10+178209..178553hypothetical protein
LOC_Os10g01320OsAffx.20387.1.S1_x_at1/1110+181261..184383retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01330NANA10+185393..187195hypothetical protein
LOC_Os10g01340OsAffx.30222.1.S1_at11/1110+193044..193571hypothetical protein
LOC_Os10g01350NANA10+195468..198369retrotransposon protein, putative, unclassified, expressed
LOC_Os10g01360NANA10+199481..204775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01370OsAffx.18069.1.S1_at11/1110+207704..208150expressed protein
LOC_Os10g01370OsAffx.7657.1.S1_x_at1/1110+207704..208150expressed protein
LOC_Os10g01380Os.27723.1.S1_a_at11/1110+212904..218022hypothetical protein
LOC_Os10g01380Os.38157.1.S1_s_at1/1110+212904..218022hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30222.1.S1_at--440--8292Chr10:193496..193520 (25 bp)
GGCTTTTCTCCCCATATTTTCCAGA
LOC_Os10g01340
OsAffx.30222.1.S1_at--986--10372Chr10:193493..193517 (25 bp)
TTTTCTCCCCATATTTTCCAGACAG
LOC_Os10g01340
OsAffx.30222.1.S1_at--733--10592Chr10:193491..193515 (25 bp)
TTCTCCCCATATTTTCCAGACAGTG
LOC_Os10g01340
OsAffx.30222.1.S1_at--861--3791Chr10:193489..193513 (25 bp)
CTCCCCATATTTTCCAGACAGTGGA
LOC_Os10g01340
OsAffx.30222.1.S1_at--646--231Chr10:193483..193507 (25 bp)
ATATTTTCCAGACAGTGGATACCGA
LOC_Os10g01340
OsAffx.30222.1.S1_at--424--6491Chr10:193466..193490 (25 bp)
GATACCGAGGGCAATGGCAGAGACG
LOC_Os10g01340
OsAffx.30222.1.S1_at--172--5971Chr10:193447..193471 (25 bp)
GAGACGGTGGAAGCCACGAGGCGGA
LOC_Os10g01340
OsAffx.30222.1.S1_at--968--5731Chr10:193198..193222 (25 bp)
GACGGACCGCGTCGGCTGTTGGGAG
LOC_Os10g01340
OsAffx.30222.1.S1_at--73--1331Chr10:193088..193112 (25 bp)
AGAGGCAATGGACAGCGCAGTCTCC
LOC_Os10g01340
OsAffx.30222.1.S1_at--991--931Chr10:193086..193110 (25 bp)
AGGCAATGGACAGCGCAGTCTCCTT
LOC_Os10g01340
OsAffx.30222.1.S1_at--277--2971Chr10:193082..193106 (25 bp)
AATGGACAGCGCAGTCTCCTTGTCC
LOC_Os10g01340
Target Sequence 
GGCTTTTCTCCCCATATTTTCCAGACAGTGGATACCGAGGGCAATGGCAGAGACGGTGGAAGCCACGAGGCGGAGGCGCG
GTCCGAGCGGTGGCGCGGCGGACGGCGTCGGCGTGGTCGGAGCAGTGGCGCGGCGGACGGCGTCGGCGCTCGGAGGGGAG
GCGCCGCGGACGGCGTCGGCGAGGTCGGAGCGGTGGCGTGGCGGACGGCGTCGACGAGGTCGGAGCGGTGGCGAGGCGGA
CGGCGTCGGCGCTCGGAGGGGAGGCGCGGTGGACGGTGTCGGCGAGGTCGAAGGGCGCGACGGACCGCGTCGGCTGTTGG
GAGGGGAGGCGCGGTGGACGGCGTCGGCGTGGTCGGGAGGGGAGGCGTGGTGGATGGCGTCGACGTGGTCGGAGTGGAGG
CGCGGTGGAGAGGCAATGGACAGCGCAGTCTCCTTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis