Browse Element(s) Details


Os.46539.1.S1_at

Description gb:AK066584.1
DB_XREF= gi:32976602
TID=Os.46539.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0096E22.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074P05, full insert sequence.
FL= gb:AK066584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0129011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01250NANA10+149922..150228hypothetical protein
LOC_Os10g01260OsAffx.8585.1.S1_at11/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01260Os.52447.1.S1_x_at1/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01274OsAffx.30220.2.S1_x_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01274OsAffx.30220.1.S1_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01290Os.46539.1.S1_at11/1110+171016..172684expressed protein
LOC_Os10g01300NANA10+174729..176764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01310NANA10+178209..178553hypothetical protein
LOC_Os10g01320OsAffx.20387.1.S1_x_at1/1110+181261..184383retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01330NANA10+185393..187195hypothetical protein
LOC_Os10g01340OsAffx.30222.1.S1_at11/1110+193044..193571hypothetical protein
LOC_Os10g01350NANA10+195468..198369retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46539.1.S1_at--839--251Chr10:171591..171615 (25 bp)
ATATGCTTCGCCTTGTGCATGCACA
LOC_Os10g01290
Os.46539.1.S1_at--1142--771Chr10:171561..171585 (25 bp)
ATGGGAACAAGGTTCCTCTTGCCGC
LOC_Os10g01290
Os.46539.1.S1_at--753--8211Chr10:171519..171543 (25 bp)
GGAATTCCAGGTGACAGCTTGTCCC
LOC_Os10g01290
Os.46539.1.S1_at--71--10211Chr10:171418..171442 (25 bp)
TATTATTACAAGCTTGGCGCCTCAT
LOC_Os10g01290
Os.46539.1.S1_at--1111--8391Chr10:171403..171427 (25 bp)
GGCGCCTCATTGTCATATTACCATG
LOC_Os10g01290
Os.46539.1.S1_at--83--5571Chr10:171361..171385 (25 bp)
GAAAGCATCAAGGTTCCATCAACAA
LOC_Os10g01290
Os.46539.1.S1_at--905--8851Chr10:171200..171224 (25 bp)
TGATGCTGTTTTATGCTTGCCAATT
LOC_Os10g01290
Os.46539.1.S1_at--527--7031Chr10:171170..171194 (25 bp)
GTAAAGTGGCCTAGTTTTTGTCAAT
LOC_Os10g01290
Os.46539.1.S1_at--1071--10512Chr10:171124..171148 (25 bp)
TTCAGCTGTCTTTCCATGCATGTAA
LOC_Os10g01290
Os.46539.1.S1_at--652--7071Chr10:171103..171127 (25 bp)
GTAATCCATAGAGCTTGTCTGCTTT
LOC_Os10g01290
Os.46539.1.S1_at--318--8771Chr10:171073..171097 (25 bp)
TGTTTGGTATTCACTCTTTCTTCTG
LOC_Os10g01290
Target Sequence 
ATATGCTTCGCCTTGTGCATGCACATTTCCATGGGAACAAGGTTCCTCTTGCCGCCATAGCTCACTGCTATTGGAATTCC
AGGTGACAGCTTGTCCCCCATCTTCATTAGTTGCACACTAAATTATTACTACTATATCTGTAGATTGCAAATTGATCCTA
TACCACTAGTAGTTATTATTACAAGCTTGGCGCCTCATTGTCATATTACCATGTCTTTGGGGTGTTGGCTGAAAGCATCA
AGGTTCCATCAACAACTAGACTGGAATTTTCAGATGGTGGTTGTTTTGTTTGTGGCTTGATTGATTGACACGAGGTATAT
GATGGCTAAATTAAATCATACTAGCCGAATTGGCAATTTTAGTGTATGATAATTTTGATACGGGTAGTGATTGATGCTGT
TTTATGCTTGCCAATTTTAGTGTAAAGTGGCCTAGTTTTTGTCAATAGCTTCTTGTTGCTGATGCTCTTCAGCTGTCTTT
CCATGCATGTAATCCATAGAGCTTGTCTGCTTTTTTTTTGTTTGGTATTCACTCTTTCTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis