Browse Element(s) Details


OsAffx.30220.1.S1_at

Description gb:NM_194490.1
DB_XREF= gi:37530339
TID=OsAffx.30220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0096E22.1), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0127411/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01230OsAffx.20820.1.S1_at11/1110+137336..138703retrotransposon protein, putative, unclassified
LOC_Os10g01240OsAffx.20819.1.S1_at11/1110+144062..144352VQ motif family protein
LOC_Os10g01250NANA10+149922..150228hypothetical protein
LOC_Os10g01260OsAffx.8585.1.S1_at11/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01260Os.52447.1.S1_x_at1/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01274OsAffx.30220.2.S1_x_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01274OsAffx.30220.1.S1_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01290Os.46539.1.S1_at11/1110+171016..172684expressed protein
LOC_Os10g01300NANA10+174729..176764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01310NANA10+178209..178553hypothetical protein
LOC_Os10g01320OsAffx.20387.1.S1_x_at1/1110+181261..184383retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01330NANA10+185393..187195hypothetical protein
LOC_Os10g01340OsAffx.30222.1.S1_at11/1110+193044..193571hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30220.1.S1_at--1011--151Chr10:168137..168161 (25 bp)
ATTTTGGAATCCTCTGCAGTGTCAG
LOC_Os10g01274
OsAffx.30220.1.S1_at--28--2031Chr10:168260..168284 (25 bp)
ACTACTGGCAGTGTGTCTCGAATGG
LOC_Os10g01274
OsAffx.30220.1.S1_at--143--1271Chr10:168333..168357 (25 bp)
AGATTTCTGCGCTAAAGGCTCAACG
LOC_Os10g01274
OsAffx.30220.1.S1_at--1115--9951Chr10:168454..168478 (25 bp)
TACCACCCTGGGTTCTGAAATTTTG
LOC_Os10g01274
OsAffx.30220.1.S1_at--394--3451Chr10:168517..168541 (25 bp)
CAGTCAGGGCTTAATGGCTATTTCA
LOC_Os10g01274
OsAffx.30220.1.S1_at--273--8311Chr10:168532..168556 (25 bp)
GGCTATTTCAGTTCAGTCAATGCAT
LOC_Os10g01274
OsAffx.30220.1.S1_at--670--2531Chr10:168565..168589 (25 bp)
AACTATGGGCTGTATGCGTCTGTTA
LOC_Os10g01274
OsAffx.30220.1.S1_at--392--6371Chr10:168616..168640 (25 bp)
GATCCTTGTTGATTCTGGCAGTACA
LOC_Os10g01274
OsAffx.30220.1.S1_at--500--8471Chr10:168631..168655 (25 bp)
TGGCAGTACAGCTGGTTTCCTTAGC
LOC_Os10g01274
OsAffx.30220.1.S1_at--757--10451Chr10:168651..168675 (25 bp)
TTAGCTCTCAGGTTGCTCAGACTAT
LOC_Os10g01274
OsAffx.30220.1.S1_at--756--3411Chr10:168668..168692 (25 bp)
CAGACTATCTCAATGCGTCACGCAA
LOC_Os10g01274
Target Sequence 
ATTTTGGAATCCTCTGCAGTGTCAGTTTCAAATCCGAAGAAGATTGACAATGGGTTGCAGATTCGACCAAATCTTGCTTA
CAAGGGTGCTTTACCTTTGCCCTTACCACCAAATCGTGGGGTGACTACTGGCAGTGTGTCTCGAATGGAAGATCGCAAGA
CTCTTGACAACGGTAAGTTGGTGAACGGTACTGATAAGATTTCTGCGCTAAAGGCTCAACGCAGAGCTCATGGTTTATGT
TATATTTGTGCTGAGAAATGGTCTCCTACTCACAAATATGCTAATACTGTTCAGTTGCATGCTGTTCAGGAATTACTTAC
CACCCTGGGTTCTGAAATTTTGTATGATCAGGAATTTACTGAAGAATGTGAAGGATCTGACAGTCAGGGCTTAATGGCTA
TTTCAGTTCAGTCAATGCATGGGTCTGAAACTATGGGCTGTATGCGTCTGTTAGGATTTATTCAAGGTAGAGAGGTGCTG
ATCCTTGTTGATTCTGGCAGTACAGCTGGTTTCCTTAGCTCTCAGGTTGCTCAGACTATCTCAATGCGTCACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis